Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

5493932 .. 5495280

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0063000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTTACAAAGAGAGAACCAGATGTTCCTCATATCCGGGTGGAATTCCGGGAAACAATATGGAGGGAGGAGATGAAACAGGTTTATCTTGGCAAGGCTATTATCCCCAGAGAAGTTGACAGAAGGTCCCAACGGATGTGCAACTTGATATCATACCGGAGTAGTAATTGTAGAGCTCCTGATGTTGCTGGTGGAAGTAACCATCCTAAGGCCTTGCTCCTTGAGATGGAAATGAGGTTAAACCTGAAACAGAATCACCGATTTGCTGCCAGTGGTGGGCATAATAGTCAAGGGATTATGGATATGGACTGGACATGGGTTTTGGGTATAGATAGTTACTCAGATGTTAGTGCCAATTATGCATGGGGACTAGTGCAAGTAGTGGTTTGTTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

132

Amino Acids

15.22

Weight (kDa)

8.41

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	44
AfiI	CCNNNNNNNGG	3 cut(s)	208, 226, 276
AhdI	GACNNNNNGTC	1 cut(s)	124
AhlI	ACTAGT	1 cut(s)	370
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	2 cut(s)	38, 50
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	126
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	210, 220
BcnI	CCSGG	2 cut(s)	38, 50
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	38, 50
Bme18I	GGWCC	1 cut(s)	126
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	38, 50
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	38, 50
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 226, 276
Bse1I	ACTGG	2 cut(s)	270, 314
Bse21I	CCTNAGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	141, 202
BseLI	CCNNNNNNNGG	3 cut(s)	208, 226, 276
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	270, 314
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	3 cut(s)	37, 49, 157
BslFI	GGGAC	2 cut(s)	112, 381
BslI	CCNNNNNNNGG	3 cut(s)	208, 226, 276
BsmFI	GGGAC	2 cut(s)	112, 381
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	270, 314
BstDEI	CTNAG	2 cut(s)	207, 340
BstF5I	GGATG	2 cut(s)	141, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	36, 48
BstV1I	GCAGC	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	141, 202
BtsIMutI	CAGTG	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	126
CviAII	CATG	2 cut(s)	315, 363
CviJI	RGCY	3 cut(s)	98, 176, 212
CviKI_1	RGCY	3 cut(s)	98, 176, 212
DdeI	CTNAG	2 cut(s)	207, 340
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1105I	GACNNNNNGTC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	318, 366
FaqI	GGGAC	2 cut(s)	112, 381
FatI	CATG	2 cut(s)	314, 362
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	2 cut(s)	148, 189
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	3 cut(s)	37, 49, 157
Hin1II	CATG	2 cut(s)	318, 366
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	37, 49, 157
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	141, 362, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	207, 340
Hsp92II	CATG	2 cut(s)	318, 366
LmnI	GCTCC	2 cut(s)	181, 222
Lsp1109I	GCAGC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	197, 335
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	44, 166, 355
MnlI	CCTC	4 cut(s)	39, 57, 61, 228
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	1 cut(s)	239
MspI	CCGG	3 cut(s)	37, 49, 157
MspR9I	CCNGG	2 cut(s)	38, 50
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	2 cut(s)	38, 50
NlaIII	CATG	2 cut(s)	318, 366
NlaIV	GGNNCC	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	38, 50
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	5 cut(s)	84, 128, 178, 239, 246
SinI	GGWCC	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	370
Sse9I	AATT	3 cut(s)	44, 166, 355
SseBI	AGGCCT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	178
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	36, 48
TasI	AATT	3 cut(s)	44, 166, 355
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	44
XspI	CTAG	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.