Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002052.1

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

6066 .. 6930

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002052.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgagaggttcccaggagcatgctggaacagttccaatgtccatgcgtcatgaccctatggctgctgctgcggaagccattgtattgttagaagcctatgtaacattcacagtagatttacgtgcaattgatgacatgggacgtgaagctgttgtatatgaattatctaaccgattgtatcaaatatgtgataggcattcagtttcgtgcacaattgatcgtaagcatgatgcaaatgcagtcatttgcgattctgaactgactttgaagctgaagtctgcggcttatcttgggctcaagagaatgacaggttctgttcaggatgaagtacctgtattaatgagtggagcaggacatgatgcaatggctctgtctcatttaactaaggtgggtatgctttttgtccgctgtcgaggaggcataagtcactcccctgaagaacatgtattggatgatgatgtttgggcgtctggtttggcaatcctggcattcattgagactgagctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

169

Amino Acids

18.46

Weight (kDa)

5.25

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	71, 281, 406
AcuI	CTGAAG	2 cut(s)	293, 456
AcyI	GRCGYC	1 cut(s)	467
AfaI	GTAC	1 cut(s)	330
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	12, 483
AluBI	AGCT	3 cut(s)	149, 271, 505
AluI	AGCT	3 cut(s)	149, 271, 505
Alw21I	GWGCWC	2 cut(s)	212, 507
Alw26I	GTCTC	2 cut(s)	378, 491
Alw44I	GTGCAC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	62, 65, 68
AseI	ATTAAT	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	297, 507
Bbv12I	GWGCWC	2 cut(s)	212, 507
BbvI	GCAGC	3 cut(s)	49, 52, 55
BciT130I	CCWGG	2 cut(s)	14, 485
BcoDI	GTCTC	2 cut(s)	378, 491
BfaI	CTAG	1 cut(s)	508
BisI	GCNGC	4 cut(s)	63, 66, 69, 282
BlsI	GCNGC	4 cut(s)	64, 67, 70, 283
Bme1390I	CCNGG	2 cut(s)	14, 485
BmgBI	CACGTC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	14, 485
BmsI	GCATC	2 cut(s)	220, 349
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	14, 485
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	328, 457
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	49, 52, 55
BsiHKAI	GWGCWC	2 cut(s)	212, 507
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	378, 491
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	196, 488
Bsp1286I	GDGCHC	3 cut(s)	212, 297, 507
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	3 cut(s)	71, 281, 406
BspCNI	CTCAG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	14, 485
Bst4CI	ACNGT	2 cut(s)	31, 112
BstACI	GRCGYC	1 cut(s)	467
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	384, 501
BstF5I	GGATG	2 cut(s)	328, 457
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	378, 491
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 74, 485
BstNI	CCWGG	2 cut(s)	14, 485
BstNSI	RCATGY	2 cut(s)	23, 446
BstSCI	CCNGG	2 cut(s)	12, 483
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	49, 52, 55
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	328, 457
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	49
CseI	GACGC	2 cut(s)	35, 456
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	7 cut(s)	20, 43, 50, 136, 227, 356, 443
CviJI	RGCY	9 cut(s)	62, 77, 95, 149, 271, 284, 295, 368, 505
CviKI_1	RGCY	9 cut(s)	62, 77, 95, 149, 271, 284, 295, 368, 505
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	384, 501
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	297, 507
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	293, 456
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	12, 483
EcoT38I	GRGCYC	2 cut(s)	297, 507
FaeI	CATG	7 cut(s)	23, 46, 53, 139, 230, 359, 446
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	7 cut(s)	19, 42, 49, 135, 226, 355, 442
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 282
FokI	GGATG	2 cut(s)	335, 464
FriOI	GRGCYC	2 cut(s)	297, 507
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 282
FspBI	CTAG	1 cut(s)	508
GluI	GCNGC	4 cut(s)	63, 66, 69, 282
HgaI	GACGC	2 cut(s)	35, 456
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	7 cut(s)	23, 46, 53, 139, 230, 359, 446
HinfI	GANTC	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	50, 298, 320
Hpy8I	GTNNAC	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	31, 112
HpyCH4IV	ACGT	2 cut(s)	121, 142
HpyCH4V	TGCA	5 cut(s)	125, 210, 233, 239, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 74, 485
HpyF3I	CTNAG	2 cut(s)	384, 501
HpySE526I	ACGT	2 cut(s)	121, 142
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	7 cut(s)	23, 46, 53, 139, 230, 359, 446
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	16, 347
Lsp1109I	GCAGC	3 cut(s)	49, 52, 55
LweI	GCATC	2 cut(s)	220, 349
MaeI	CTAG	1 cut(s)	508
MaeII	ACGT	2 cut(s)	121, 142
MaeIII	GTNAC	2 cut(s)	100, 425
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	449
MfeI	CAATTG	2 cut(s)	126, 213
MhlI	GDGCHC	3 cut(s)	212, 297, 507
MluCI	AATT	3 cut(s)	126, 161, 213
MnlI	CCTC	2 cut(s)	407, 410
MseI	TTAA	2 cut(s)	338, 380
MspA1I	CMGCKG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	14, 485
MunI	CAATTG	2 cut(s)	126, 213
Mva1269I	GAATGC	2 cut(s)	196, 488
MvaI	CCWGG	2 cut(s)	14, 485
MwoI	GCNNNNNNNGC	3 cut(s)	68, 74, 485
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	7 cut(s)	23, 46, 53, 139, 230, 359, 446
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	2 cut(s)	23, 446
PaeI	GCATGC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	49
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	2 cut(s)	196, 488
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	64, 67, 70, 283
Ppu21I	YACGTR	1 cut(s)	122
PscI	ACATGT	1 cut(s)	442
PshBI	ATTAAT	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	12, 483
PspGI	CCWGG	2 cut(s)	12, 483
PspN4I	GGNNCC	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	338, 380
SatI	GCNGC	4 cut(s)	63, 66, 69, 282
Sau3AI	GATC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	14, 485
SduI	GDGCHC	3 cut(s)	212, 297, 507
SetI	ASST	9 cut(s)	10, 124, 145, 151, 273, 313, 334, 390, 507
SfaNI	GCATC	2 cut(s)	220, 349
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	126, 161, 213
SsiI	CCGC	3 cut(s)	71, 281, 406
SspMI	CTAG	1 cut(s)	508
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	12, 483
TaaI	ACNGT	2 cut(s)	31, 112
TaiI	ACGT	2 cut(s)	124, 145
TaqI	TCGA	1 cut(s)	412
TasI	AATT	3 cut(s)	126, 161, 213
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	338, 380
Tru9I	TTAA	2 cut(s)	338, 380
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	3 cut(s)	62, 65, 68
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	174, 339, 481
VneI	GTGCAC	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	338
XceI	RCATGY	2 cut(s)	23, 446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.