Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2527807 .. 2530317

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAAGCTGTGTCAGGAAATATTGAGAGATGAAGCTGTAAGTGATGGCGATGGTTATCTTGAGAGGATATTCATGAGCCCAGCAGCAGTGAGGGCTGGAAATCTTATCCACGAATGGATGGAGGATGCTGGTTTGCGAACGTGGGTTGATTGCTTGGGAAATGTACATGGTCGACTTGAGGGTACAAATGCTAGTGCTGAGGTTCTAATACTTGGTTCTCATTTGGTTTTGAGTATCGATGGAAAATTGGGAGAACTAAAGCGGCCGGTTGAGGTAATAGCATTTAGTGATGAAGAACGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGGACTGCAAATAACTGATAAAAGTGGTGTGACAATCCAAGATGCTCCTAAGAAAATCTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTTGAATGGGTTGGTGTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGATTAAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCATATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGATATGATGCAATGGCTCTATCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCTCTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCATCTGGTTTGGAGATCCTGGCATTCATAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

286

Amino Acids

31.13

Weight (kDa)

5.0

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	66 - 279	8.6e-09	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	172, 314
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	826
AcoI	YGGCCR	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	644, 807
AfaI	GTAC	4 cut(s)	165, 184, 513, 681
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	425, 500, 518
AhdI	GACNNNNNGTC	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	834
AluBI	AGCT	8 cut(s)	7, 35, 341, 451, 557, 610, 622, 856
AluI	AGCT	8 cut(s)	7, 35, 341, 451, 557, 610, 622, 856
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	842
AlwI	GGATC	1 cut(s)	826
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	263, 506
ApeKI	GCWGC	5 cut(s)	83, 332, 445, 448, 632
ApoI	RAATTY	1 cut(s)	345
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AseI	ATTAAT	1 cut(s)	689
AspS9I	GGNCC	1 cut(s)	506
AsuII	TTCGAA	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	80, 648
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	5 cut(s)	95, 319, 457, 460, 644
BccI	CCATC	4 cut(s)	38, 44, 112, 233
BciT130I	CCWGG	1 cut(s)	836
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	3 cut(s)	192, 536, 859
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	6 cut(s)	84, 263, 333, 446, 449, 633
BlsI	GCNGC	6 cut(s)	85, 264, 334, 447, 450, 634
Bme1390I	CCNGG	1 cut(s)	836
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	506
BmrFI	CCNGG	1 cut(s)	836
BmsI	GCATC	5 cut(s)	115, 391, 571, 700, 827
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	3 cut(s)	80, 197, 632
Bsa29I	ATCGAT	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	836
BseCI	ATCGAT	1 cut(s)	237
BseGI	GGATG	4 cut(s)	123, 130, 679, 808
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	3 cut(s)	189, 466, 597
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	449, 780
BseX3I	CGGCCG	1 cut(s)	263
BseXI	GCAGC	5 cut(s)	95, 319, 457, 460, 644
BseYI	CCCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	265, 508
BshVI	ATCGAT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	842
BsmI	GAATGC	1 cut(s)	839
BsnI	GGCC	2 cut(s)	265, 508
Bsp119I	TTCGAA	1 cut(s)	617
Bsp1286I	GDGCHC	3 cut(s)	80, 441, 648
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	831
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	265, 508
BspCNI	CTCAG	3 cut(s)	190, 465, 598
BspDI	ATCGAT	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	72
BspPI	GGATC	1 cut(s)	826
BspT104I	TTCGAA	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	265
BsrGI	TGTACA	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	265
BssMI	GATC	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	836
BstAUI	TGTACA	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	617
BstDEI	CTNAG	6 cut(s)	198, 408, 452, 606, 735, 852
BstF5I	GGATG	4 cut(s)	123, 130, 679, 808
BstKTI	GATC	1 cut(s)	834
BstMAI	GTCTC	1 cut(s)	842
BstMBI	GATC	1 cut(s)	831
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 338, 445
BstNI	CCWGG	1 cut(s)	836
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	1 cut(s)	834
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	5 cut(s)	95, 319, 457, 460, 644
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
BstZI	CGGCCG	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	265, 508
BsuTUI	ATCGAT	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	4 cut(s)	123, 130, 679, 808
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	665
CciI	TCATGA	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	506
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	4 cut(s)	164, 183, 512, 680
CviAII	CATG	4 cut(s)	73, 167, 578, 794
CviQI	GTAC	4 cut(s)	164, 183, 512, 680
DdeI	CTNAG	6 cut(s)	198, 408, 452, 606, 735, 852
DpnI	GATC	1 cut(s)	833
DpnII	GATC	1 cut(s)	831
DriI	GACNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	263
EagI	CGGCCG	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EclXI	CGGCCG	1 cut(s)	263
Eco24I	GRGCYC	2 cut(s)	80, 648
Eco52I	CGGCCG	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	644, 807
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	834
EcoT38I	GRGCYC	2 cut(s)	80, 648
FaeI	CATG	4 cut(s)	76, 170, 581, 797
FatI	CATG	4 cut(s)	72, 166, 577, 793
FblI	GTMKAC	2 cut(s)	172, 314
Fnu4HI	GCNGC	6 cut(s)	84, 263, 333, 446, 449, 633
FokI	GGATG	4 cut(s)	130, 137, 686, 815
FriOI	GRGCYC	2 cut(s)	80, 648
Fsp4HI	GCNGC	6 cut(s)	84, 263, 333, 446, 449, 633
FspBI	CTAG	3 cut(s)	192, 536, 859
GluI	GCNGC	6 cut(s)	84, 263, 333, 446, 449, 633
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	265, 508
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	4 cut(s)	76, 170, 581, 797
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	3 cut(s)	490, 602, 850
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	173, 315
Hpy188I	TCNGA	2 cut(s)	455, 607
Hpy188III	TCNNGA	6 cut(s)	14, 59, 73, 360, 649, 671
Hpy8I	GTNNAC	2 cut(s)	173, 315
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	5 cut(s)	367, 445, 584, 590, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 338, 445
HpyF3I	CTNAG	6 cut(s)	198, 408, 452, 606, 735, 852
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	4 cut(s)	76, 170, 581, 797
Kzo9I	GATC	1 cut(s)	831
LmnI	GCTCC	3 cut(s)	409, 436, 698
Lsp1109I	GCAGC	5 cut(s)	95, 319, 457, 460, 644
LweI	GCATC	5 cut(s)	115, 391, 571, 700, 827
MaeI	CTAG	3 cut(s)	192, 536, 859
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	3 cut(s)	388, 427, 776
MalI	GATC	1 cut(s)	833
MboI	GATC	1 cut(s)	831
MboII	GAAGA	2 cut(s)	305, 800
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	3 cut(s)	80, 441, 648
MluCI	AATT	2 cut(s)	245, 345
MlyI	GAGTC	1 cut(s)	844
MseI	TTAA	4 cut(s)	546, 572, 689, 731
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	836
Mva1269I	GAATGC	1 cut(s)	839
MvaI	CCWGG	1 cut(s)	836
MwoI	GCNNNNNNNGC	3 cut(s)	92, 338, 445
NdeII	GATC	1 cut(s)	831
NlaIII	CATG	4 cut(s)	76, 170, 581, 797
NmuCI	GTSAC	2 cut(s)	388, 776
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	617
PagI	TCATGA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	793
PctI	GAATGC	1 cut(s)	839
PfeI	GAWTC	2 cut(s)	490, 602
PkrI	GCNGC	6 cut(s)	85, 264, 334, 447, 450, 634
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PscI	ACATGT	1 cut(s)	793
PshBI	ATTAAT	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	834
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	834
PspPI	GGNCC	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	831
RsaI	GTAC	4 cut(s)	165, 184, 513, 681
RsaNI	GTAC	4 cut(s)	164, 183, 512, 680
SalI	GTCGAC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	546, 572, 689, 731
SatI	GCNGC	6 cut(s)	84, 263, 333, 446, 449, 633
Sau3AI	GATC	1 cut(s)	831
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	1 cut(s)	836
SduI	GDGCHC	3 cut(s)	80, 441, 648
SfaNI	GCATC	5 cut(s)	115, 391, 571, 700, 827
SfcI	CTRYAG	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	617
SmlI	CTYRAG	3 cut(s)	59, 176, 647
SmoI	CTYRAG	3 cut(s)	59, 176, 647
Sse9I	AATT	2 cut(s)	245, 345
SsiI	CCGC	1 cut(s)	262
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	3 cut(s)	192, 536, 859
StyD4I	CCNGG	1 cut(s)	834
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	4 cut(s)	172, 237, 617, 763
TasI	AATT	2 cut(s)	245, 345
TatI	WGTACW	2 cut(s)	163, 511
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	490, 602
Tru1I	TTAA	4 cut(s)	546, 572, 689, 731
Tru9I	TTAA	4 cut(s)	546, 572, 689, 731
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	388, 776
TseI	GCWGC	5 cut(s)	83, 332, 445, 448, 632
Tsp45I	GTSAC	2 cut(s)	388, 776
TspDTI	ATGAA	7 cut(s)	17, 45, 61, 306, 310, 690, 832
TspRI	CASTG	1 cut(s)	93
VspI	ATTAAT	1 cut(s)	689
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	1 cut(s)	797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XmiI	GTMKAC	2 cut(s)	172, 314
XspI	CTAG	3 cut(s)	192, 536, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.