Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2634461 .. 2635082

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGACCGTAAGCATGATGCAAATGCAGTCATTTGCAATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAATAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGTGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGTTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCATCTGGTTTGGCAATCCTGGCATTCCTAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

5.9

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	158, 321
AfaI	GTAC	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	5 cut(s)	14, 124, 136, 149, 370
AluI	AGCT	5 cut(s)	14, 124, 136, 149, 370
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	243, 356
Alw44I	GTGCAC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	179
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AseI	ATTAAT	1 cut(s)	203
AsuII	TTCGAA	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	243, 356
BfaI	CTAG	2 cut(s)	359, 373
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	3 cut(s)	85, 214, 341
Bpu14I	TTCGAA	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	350
BseGI	GGATG	2 cut(s)	193, 322
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	243, 356
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	77, 162
BspCNI	CTCAG	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	120, 249, 366
BstF5I	GGATG	2 cut(s)	193, 322
BstMAI	GTCTC	2 cut(s)	243, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	193, 322
CaiI	CAGNNNCTG	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	92, 221, 308
CviJI	RGCY	7 cut(s)	14, 124, 136, 149, 160, 233, 370
CviKI_1	RGCY	7 cut(s)	14, 124, 136, 149, 160, 233, 370
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	120, 249, 366
Eco24I	GRGCYC	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	158, 321
EcoRII	CCWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	3 cut(s)	95, 224, 311
FaiI	YATR	7 cut(s)	22, 52, 93, 222, 260, 287, 309
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	91, 220, 307
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	200, 329
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	2 cut(s)	359, 373
GluI	GCNGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	95, 224, 311
HinfI	GANTC	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	5 cut(s)	75, 98, 104, 114, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	3 cut(s)	120, 249, 366
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	3 cut(s)	95, 224, 311
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	159, 170, 201, 210, 312, 321, 335, 362
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	3 cut(s)	85, 214, 341
MaeI	CTAG	2 cut(s)	359, 373
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	290
MboII	GAAGA	1 cut(s)	314
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	77, 162
MluCI	AATT	3 cut(s)	26, 78, 115
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	2 cut(s)	272, 275
MseI	TTAA	2 cut(s)	203, 245
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	95, 224, 311
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	131
PciI	ACATGT	1 cut(s)	307
PctI	GAATGC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PscI	ACATGT	1 cut(s)	307
PshBI	ATTAAT	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	203, 245
SatI	GCNGC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	77, 162
SetI	ASST	9 cut(s)	10, 16, 126, 138, 151, 178, 199, 255, 372
SfaNI	GCATC	3 cut(s)	85, 214, 341
SfuI	TTCGAA	1 cut(s)	131
Sse9I	AATT	3 cut(s)	26, 78, 115
SspMI	CTAG	2 cut(s)	359, 373
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	131, 277
TasI	AATT	3 cut(s)	26, 78, 115
Tru1I	TTAA	2 cut(s)	203, 245
Tru9I	TTAA	2 cut(s)	203, 245
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	260
VneI	GTGCAC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	203
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	2 cut(s)	359, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.