RchiOBHm_Chr1g0315581

Allantoate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000685
Physical Location & Seq
Forward (+)
2653617 .. 2656570
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54609

Sequence Viewer

Length: 1095 bp
ATGACAGTGGTTACACGTGTCTCCCAGAGAACCCATTCCGCCATTAGTCCCACCTCCGTTTTGGCTCTGGCTTGCCCTTTCTTGCTTCTGGTCTCTTCACCCATCACTCCCTGTTTTGGATTTTCTGGTGTTGGACAAGAAGATGAGAGAAACAGAGGAGGGGATTTGTATCAGGAAATATTGAGAGATGAGGCTGTGGCAAGACTTCATCAGCTTGGAAAGGTAAGTGATGGTGATGGTTATCTTGAGAGGATATTCATGACCCCAGCAGCTGTGAGGGCTGGAAGTCTTATCCTCGAATGGATGGAGGATGCTGGTTTGAGAACGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTACAAATGCTAGTGCTGAGGTTCTAATACTTGGTTCTCATTTGGATACTATTGTTGATGCCGGGATATTTGATGGGTCTTTAGGCATCATTTCTGTGGTATCTGTATTGAAGGTTTTGAGTATCGATGGAAAATTGGGAGAACTAAAGTGGGCGGTTGAGTCTACATTCATAGGAAGTGCTGCTATAGCTAAAATTTTACCTGTTTCAGGACTGCAAATAACTGATAAAAGTGGTGTGACAATCCAAGAAGCTCCTAAGAAAAACTCCATTGCAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATTTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTTTGAGCTGACTTTGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACATGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTTTGTTATCTTTAA

Protein Analysis

364

Amino Acids

39.5

Weight (kDa)

5.71

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20070 AT4G20070
fragaria_vesca FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica MD10G1228200.v1.1
prunus_persica Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis pycom10g19170
rosa_chinensis RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 530
AciI CCGC 2 cut(s) 39, 521
AcsI RAATTY 1 cut(s) 561
AcuI CTGAAG 1 cut(s) 986
AcvI CACGTG 1 cut(s) 17
AfaI GTAC 4 cut(s) 351, 370, 729, 1023
AfiI CCNNNNNNNGG 2 cut(s) 116, 575
AflIII ACRYGT 3 cut(s) 14, 16, 1024
AgsI TTSAA 3 cut(s) 478, 716, 961
AhdI GACNNNNNGTC 1 cut(s) 682
AjiI CACGTC 1 cut(s) 836
Alw21I GWGCWC 2 cut(s) 657, 905
Alw26I GTCTC 3 cut(s) 25, 97, 1071
Alw44I GTGCAC 1 cut(s) 901
AlwNI CAGNNNCTG 2 cut(s) 272, 1007
AoxI GGCC 1 cut(s) 722
ApaLI GTGCAC 1 cut(s) 901
ApeKI GCWGC 5 cut(s) 269, 548, 661, 664, 974
ApoI RAATTY 1 cut(s) 561
AseI ATTAAT 1 cut(s) 1031
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 722
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 90, 245
BaeGI GKGCMC 1 cut(s) 905
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BanII GRGCYC 1 cut(s) 990
BbrPI CACGTG 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 657, 905
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 5 cut(s) 281, 535, 673, 676, 986
BccI CCATC 6 cut(s) 110, 224, 230, 298, 434, 488
BciVI GTATCC 1 cut(s) 406
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 25, 97, 1071
BfaI CTAG 2 cut(s) 378, 752
BfmI CTRYAG 1 cut(s) 552
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 5 cut(s) 270, 549, 662, 665, 975
BlsI GCNGC 5 cut(s) 271, 550, 663, 666, 976
Bme1390I CCNGG 1 cut(s) 430
BmeRI GACNNNNNGTC 1 cut(s) 682
BmgBI CACGTC 1 cut(s) 836
BmgT120I GGNCC 1 cut(s) 722
BmrFI CCNGG 1 cut(s) 430
BmsI GCATC 5 cut(s) 301, 415, 462, 913, 1042
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 266, 974
BpuMI CCSGG 1 cut(s) 430
Bsa29I ATCGAT 1 cut(s) 492
BsaAI YACGTR 2 cut(s) 17, 815
BsaBI GATNNNNATC 2 cut(s) 168, 240
BsaI GGTCTC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 575
Bse1I ACTGG 1 cut(s) 735
Bse3DI GCAATG 2 cut(s) 636, 1062
Bse8I GATNNNNATC 2 cut(s) 168, 240
BseCI ATCGAT 1 cut(s) 492
BseGI GGATG 3 cut(s) 309, 316, 1021
BseJI GATNNNNATC 2 cut(s) 168, 240
BseLI CCNNNNNNNGG 2 cut(s) 116, 575
BseMI GCAATG 2 cut(s) 636, 1062
BseMII CTCAG 2 cut(s) 375, 682
BseNI ACTGG 1 cut(s) 735
BseRI GAGGAG 2 cut(s) 171, 665
BseSI GKGCMC 1 cut(s) 905
BseXI GCAGC 5 cut(s) 281, 535, 673, 676, 986
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 724
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 657, 905
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 2 cut(s) 33, 846
BslI CCNNNNNNNGG 2 cut(s) 116, 575
BsmAI GTCTC 3 cut(s) 25, 97, 1071
BsmFI GGGAC 2 cut(s) 33, 846
BsnI GGCC 1 cut(s) 724
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 3 cut(s) 657, 905, 990
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 1 cut(s) 910
BspACI CCGC 2 cut(s) 39, 521
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 2 cut(s) 376, 681
BspDI ATCGAT 1 cut(s) 492
BspHI TCATGA 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 636, 1062
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 1 cut(s) 735
BssMI GATC 1 cut(s) 910
Bst4CI ACNGT 2 cut(s) 7, 805
Bst6I CTCTTC 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 349
BstBAI YACGTR 2 cut(s) 17, 815
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 4 cut(s) 384, 624, 668, 1077
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 3 cut(s) 309, 316, 1021
BstKTI GATC 1 cut(s) 913
BstMAI GTCTC 3 cut(s) 25, 97, 1071
BstMBI GATC 1 cut(s) 910
BstMWI GCNNNNNNNGC 3 cut(s) 278, 554, 661
BstNSI RCATGY 1 cut(s) 1028
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 1 cut(s) 552
BstSLI GKGCMC 1 cut(s) 905
BstV1I GCAGC 5 cut(s) 281, 535, 673, 676, 986
Bsu15I ATCGAT 1 cut(s) 492
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 724
BsuTUI ATCGAT 1 cut(s) 492
BtrI CACGTC 1 cut(s) 836
BtsCI GGATG 3 cut(s) 309, 316, 1021
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 2 cut(s) 272, 1007
CciI TCATGA 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 722
ClaI ATCGAT 1 cut(s) 492
Csp6I GTAC 4 cut(s) 350, 369, 728, 1022
CviAII CATG 6 cut(s) 259, 353, 829, 920, 1025, 1049
CviQI GTAC 4 cut(s) 350, 369, 728, 1022
DdeI CTNAG 4 cut(s) 384, 624, 668, 1077
DpnI GATC 1 cut(s) 912
DpnII GATC 1 cut(s) 910
DriI GACNNNNNGTC 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 100
Eam1105I GACNNNNNGTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 990
Eco31I GGTCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 986
Eco72I CACGTG 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 990
FaeI CATG 6 cut(s) 262, 356, 832, 923, 1028, 1052
FaqI GGGAC 2 cut(s) 33, 846
FatI CATG 6 cut(s) 258, 352, 828, 919, 1024, 1048
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 5 cut(s) 270, 549, 662, 665, 975
FokI GGATG 3 cut(s) 316, 323, 1028
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 5 cut(s) 270, 549, 662, 665, 975
FspBI CTAG 2 cut(s) 378, 752
GluI GCNGC 5 cut(s) 270, 549, 662, 665, 975
GsaI CCCAGC 1 cut(s) 269
HaeIII GGCC 1 cut(s) 724
HapII CCGG 1 cut(s) 429
Hin1II CATG 6 cut(s) 262, 356, 832, 923, 1028, 1052
HinfI GANTC 2 cut(s) 527, 706
HpaII CCGG 1 cut(s) 429
HphI GGTGA 2 cut(s) 90, 245
Hpy166II GTNNAC 2 cut(s) 531, 903
Hpy188I TCNGA 1 cut(s) 671
Hpy188III TCNNGA 6 cut(s) 173, 245, 259, 576, 991, 1013
Hpy8I GTNNAC 2 cut(s) 531, 903
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 7, 805
HpyCH4IV ACGT 4 cut(s) 16, 326, 814, 835
HpyCH4V TGCA 8 cut(s) 583, 641, 661, 818, 903, 926, 932, 1055
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 554, 661
HpyF3I CTNAG 4 cut(s) 384, 624, 668, 1077
HpySE526I ACGT 4 cut(s) 16, 326, 814, 835
Hsp92II CATG 6 cut(s) 262, 356, 832, 923, 1028, 1052
Kzo9I GATC 1 cut(s) 910
LmnI GCTCC 3 cut(s) 625, 652, 1040
Lsp1109I GCAGC 5 cut(s) 281, 535, 673, 676, 986
LweI GCATC 5 cut(s) 301, 415, 462, 913, 1042
MaeI CTAG 2 cut(s) 378, 752
MaeII ACGT 4 cut(s) 16, 326, 814, 835
MaeIII GTNAC 4 cut(s) 10, 604, 643, 793
MalI GATC 1 cut(s) 912
MboI GATC 1 cut(s) 910
MboII GAAGA 2 cut(s) 87, 152
MfeI CAATTG 2 cut(s) 819, 906
MhlI GDGCHC 3 cut(s) 657, 905, 990
MluCI AATT 5 cut(s) 500, 561, 819, 854, 906
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 5 cut(s) 762, 861, 1031, 1073, 1093
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 430
MunI CAATTG 2 cut(s) 819, 906
MwoI GCNNNNNNNGC 3 cut(s) 278, 554, 661
NciI CCSGG 1 cut(s) 430
NdeII GATC 1 cut(s) 910
NlaIII CATG 6 cut(s) 262, 356, 832, 923, 1028, 1052
NmuCI GTSAC 1 cut(s) 604
NspI RCATGY 1 cut(s) 1028
PagI TCATGA 1 cut(s) 258
PciI ACATGT 1 cut(s) 1024
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 706
PkrI GCNGC 5 cut(s) 271, 550, 663, 666, 976
PleI GAGTC 1 cut(s) 535
PmaCI CACGTG 1 cut(s) 17
PmlI CACGTG 1 cut(s) 17
PpsI GAGTC 1 cut(s) 535
Ppu21I YACGTR 2 cut(s) 17, 815
PscI ACATGT 1 cut(s) 1024
PshBI ATTAAT 1 cut(s) 1031
PspCI CACGTG 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 722
PstNI CAGNNNCTG 2 cut(s) 272, 1007
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 4 cut(s) 351, 370, 729, 1023
RsaNI GTAC 4 cut(s) 350, 369, 728, 1022
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 5 cut(s) 762, 861, 1031, 1073, 1093
SatI GCNGC 5 cut(s) 270, 549, 662, 665, 975
Sau3AI GATC 1 cut(s) 910
Sau96I GGNCC 1 cut(s) 722
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 3 cut(s) 657, 905, 990
SfaNI GCATC 5 cut(s) 301, 415, 462, 913, 1042
SfcI CTRYAG 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 2 cut(s) 245, 989
SmoI CTYRAG 2 cut(s) 245, 989
Sse9I AATT 5 cut(s) 500, 561, 819, 854, 906
SsiI CCGC 2 cut(s) 39, 521
SspI AATATT 1 cut(s) 180
SspMI CTAG 2 cut(s) 378, 752
StyD4I CCNGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 7, 805
TaiI ACGT 4 cut(s) 19, 329, 817, 838
TaqI TCGA 3 cut(s) 297, 358, 492
TasI AATT 5 cut(s) 500, 561, 819, 854, 906
TatI WGTACW 3 cut(s) 349, 727, 1021
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 5 cut(s) 762, 861, 1031, 1073, 1093
Tru9I TTAA 5 cut(s) 762, 861, 1031, 1073, 1093
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 5 cut(s) 269, 548, 661, 664, 974
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 4 cut(s) 197, 247, 526, 1032
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 12
VneI GTGCAC 1 cut(s) 901
VspI ATTAAT 1 cut(s) 1031
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 1 cut(s) 561
XceI RCATGY 1 cut(s) 1028
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 687
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 2 cut(s) 378, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.