Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2344778 .. 2346727

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAACAGCATCATTTATGTGGTATCTGCATTGAAGGTTTTGAGTATCGATGGAAAATTGGGAGAACTAAAGCGGCCGGTTGAGGTAATAGCATTTAGTGATGAAGAACGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCTAAAGTTAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGACTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACTGTTGGTGAGATATTGACTTGGCCAAGTGCAAGTAATGTAACATTCACAGTAGATTTACGTGGAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGATCTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTATCTCATTTAACTAAGGTTTGTTATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

298

Amino Acids

32.49

Weight (kDa)

5.68

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	2 cut(s)	73, 464
AcoI	YGGCCR	2 cut(s)	74, 599
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	3 cut(s)	324, 577, 825
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	34, 209, 236, 311, 561
AjiI	CACGTC	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	7 cut(s)	152, 262, 368, 665, 754, 766, 779
AluI	AGCT	7 cut(s)	152, 262, 368, 665, 754, 766, 779
Alw21I	GWGCWC	2 cut(s)	252, 728
Alw44I	GTGCAC	1 cut(s)	724
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	3 cut(s)	74, 317, 599
ApaLI	GTGCAC	1 cut(s)	724
ApeKI	GCWGC	6 cut(s)	143, 256, 259, 458, 461, 776
ApoI	RAATTY	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	755, 787
AseI	ATTAAT	1 cut(s)	833
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	728
BalI	TGGCCA	1 cut(s)	601
BanII	GRGCYC	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	252, 728
BbvI	GCAGC	6 cut(s)	130, 268, 271, 445, 448, 788
BccI	CCATC	2 cut(s)	44, 518
BciT130I	CCWGG	1 cut(s)	407
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	7 cut(s)	74, 144, 257, 260, 459, 462, 777
BlsI	GCNGC	7 cut(s)	75, 145, 258, 261, 460, 463, 778
Bme1390I	CCNGG	1 cut(s)	407
BmgBI	CACGTC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	4 cut(s)	18, 202, 508, 844
Bpu14I	TTCGAA	1 cut(s)	761
BpuEI	CTTGAG	2 cut(s)	489, 776
Bsa29I	ATCGAT	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	405, 406
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	164, 330
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	405, 406
BseGI	GGATG	2 cut(s)	499, 823
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	2 cut(s)	277, 741
BseNI	ACTGG	2 cut(s)	164, 330
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	728
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	6 cut(s)	130, 268, 271, 445, 448, 788
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	76, 319, 601
BshVI	ATCGAT	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	252, 728
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	669
BsmFI	GGGAC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	76, 319, 601
Bsp119I	TTCGAA	1 cut(s)	761
Bsp1286I	GDGCHC	3 cut(s)	252, 728, 792
Bsp143I	GATC	1 cut(s)	733
BspACI	CCGC	2 cut(s)	73, 464
BspANI	GGCC	3 cut(s)	76, 319, 601
BspCNI	CTCAG	2 cut(s)	276, 742
BspDI	ATCGAT	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	403
BspT104I	TTCGAA	1 cut(s)	761
BspTI	CTTAAG	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	164, 330
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	405, 406
BssMI	GATC	1 cut(s)	733
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	3 cut(s)	424, 580, 628
BstAFI	CTTAAG	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	761
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	263, 750, 879
BstF5I	GGATG	2 cut(s)	499, 823
BstKTI	GATC	1 cut(s)	736
BstMBI	GATC	1 cut(s)	733
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 256, 467
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	728
BstV1I	GCAGC	6 cut(s)	130, 268, 271, 445, 448, 788
BstZI	CGGCCG	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	76, 319, 601
BsuTUI	ATCGAT	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	659
BtsCI	GGATG	2 cut(s)	499, 823
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	3 cut(s)	323, 576, 824
CviAII	CATG	5 cut(s)	413, 436, 443, 652, 851
CviQI	GTAC	3 cut(s)	323, 576, 824
DdeI	CTNAG	3 cut(s)	263, 750, 879
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
EaeI	YGGCCR	2 cut(s)	74, 599
EagI	CGGCCG	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	792
Eco52I	CGGCCG	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	788
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	792
FaeI	CATG	5 cut(s)	416, 439, 446, 655, 854
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	5 cut(s)	412, 435, 442, 651, 850
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	7 cut(s)	74, 144, 257, 260, 459, 462, 777
FokI	GGATG	2 cut(s)	486, 830
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	7 cut(s)	74, 144, 257, 260, 459, 462, 777
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	7 cut(s)	74, 144, 257, 260, 459, 462, 777
HaeIII	GGCC	3 cut(s)	76, 319, 601
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	428
Hin1II	CATG	5 cut(s)	416, 439, 446, 655, 854
HinfI	GANTC	3 cut(s)	301, 551, 746
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	126, 726
Hpy188I	TCNGA	2 cut(s)	266, 751
Hpy188III	TCNNGA	5 cut(s)	209, 443, 506, 793, 815
Hpy8I	GTNNAC	2 cut(s)	126, 726
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	3 cut(s)	424, 580, 628
HpyCH4IV	ACGT	2 cut(s)	637, 658
HpyCH4V	TGCA	7 cut(s)	29, 178, 256, 534, 608, 726, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 256, 467
HpyF3I	CTNAG	3 cut(s)	263, 750, 879
HpySE526I	ACGT	2 cut(s)	637, 658
Hsp92II	CATG	5 cut(s)	416, 439, 446, 655, 854
Kzo9I	GATC	1 cut(s)	733
LmnI	GCTCC	2 cut(s)	247, 842
Lsp1109I	GCAGC	6 cut(s)	130, 268, 271, 445, 448, 788
LweI	GCATC	4 cut(s)	18, 202, 508, 844
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	637, 658
MaeIII	GTNAC	5 cut(s)	199, 238, 388, 539, 616
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MboII	GAAGA	1 cut(s)	116
MfeI	CAATTG	1 cut(s)	729
MhlI	GDGCHC	3 cut(s)	252, 728, 792
MlsI	TGGCCA	1 cut(s)	601
MluCI	AATT	6 cut(s)	56, 156, 204, 642, 677, 729
MluNI	TGGCCA	1 cut(s)	601
MnlI	CCTC	5 cut(s)	76, 238, 354, 392, 513
Mox20I	TGGCCA	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	601
MseI	TTAA	5 cut(s)	219, 357, 833, 875, 895
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	601
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	149, 256, 467
NdeII	GATC	1 cut(s)	733
NlaIII	CATG	5 cut(s)	416, 439, 446, 655, 854
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	761
PaeI	GCATGC	1 cut(s)	416
PagI	TCATGA	1 cut(s)	442
PasI	CCCWGGG	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	301, 551, 746
PkrI	GCNGC	7 cut(s)	75, 145, 258, 261, 460, 463, 778
Ppu21I	YACGTR	1 cut(s)	638
PshBI	ATTAAT	1 cut(s)	833
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	809
RsaI	GTAC	3 cut(s)	324, 577, 825
RsaNI	GTAC	3 cut(s)	323, 576, 824
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	5 cut(s)	219, 357, 833, 875, 895
SatI	GCNGC	7 cut(s)	74, 144, 257, 260, 459, 462, 777
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	3 cut(s)	252, 728, 792
SfaNI	GCATC	4 cut(s)	18, 202, 508, 844
SfcI	CTRYAG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	3 cut(s)	218, 504, 791
SmoI	CTYRAG	3 cut(s)	218, 504, 791
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	6 cut(s)	56, 156, 204, 642, 677, 729
SsiI	CCGC	2 cut(s)	73, 464
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	3 cut(s)	424, 580, 628
TaiI	ACGT	2 cut(s)	640, 661
TaqI	TCGA	2 cut(s)	48, 761
TasI	AATT	6 cut(s)	56, 156, 204, 642, 677, 729
TatI	WGTACW	2 cut(s)	322, 575
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	301, 551, 746
Tru1I	TTAA	5 cut(s)	219, 357, 833, 875, 895
Tru9I	TTAA	5 cut(s)	219, 357, 833, 875, 895
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	6 cut(s)	143, 256, 259, 458, 461, 776
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	4 cut(s)	17, 117, 121, 834
TspRI	CASTG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	724
VspI	ATTAAT	1 cut(s)	833
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.