RchiOBHm_Chr1g0315611

Allantoate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
2675171 .. 2678040
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54612

Sequence Viewer

Length: 1221 bp
ATGAGAGAAACAGAGGAGGGGCTTGTAAGTGATGGTGATGGTTATCTTGAGAGGATATTCATGAGCCCAGCAGCTGTGAGGGCTGGAAATCTTATCCGCGAATGGATGGAGGATGCTGGTTTGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTACAAATGCTAGTGCTGAGGTTCTAATACTTGGTTCTCATTTGGTACTGATATTGGATGGGTCTTTAGGCATCATTTCTGTGGTATCTGCATTGAAGGTTTTGAGTATCGATGGAAAATTGGGAGACCTAAAGCGGCTGGTTGAGGTAATAGCATTTAGTGATGAAGAAGGAGAAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGTCTGTACTGGAATGGGTTGGTTTTCCTCTTGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCATCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCGCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACCATTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGGAACATTCACAGTAGATTTACGTGCAATTGATGACATAGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTACAGTTTTGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTGGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAAATAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTGGATGATGATGTTTAG

Protein Analysis

406

Amino Acids

43.98

Weight (kDa)

5.09

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 82 - 405 2.4e-09 Peptidase family M20/M25/M40
M20_dimer PF07687 199 - 311 6.7e-06 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20070 AT4G20070
fragaria_vesca FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica MD10G1228200.v1.1
prunus_persica Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis pycom10g19170
rosa_chinensis RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 350
AccII CGCG 1 cut(s) 99
AciI CCGC 5 cut(s) 97, 298, 689, 728, 1162
AcoI YGGCCR 1 cut(s) 824
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 2 cut(s) 1049, 1212
AfaI GTAC 7 cut(s) 147, 166, 210, 549, 802, 955, 1086
AfiI CCNNNNNNNGG 1 cut(s) 854
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 1198
AgsI TTSAA 5 cut(s) 259, 434, 461, 536, 786
AhdI GACNNNNNGTC 1 cut(s) 502
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 2 cut(s) 630, 847
AluBI AGCT 8 cut(s) 74, 377, 487, 593, 905, 1015, 1027, 1040
AluI AGCT 8 cut(s) 74, 377, 487, 593, 905, 1015, 1027, 1040
Alw21I GWGCWC 2 cut(s) 477, 968
Alw26I GTCTC 2 cut(s) 282, 1134
Alw44I GTGCAC 1 cut(s) 964
AlwNI CAGNNNCTG 2 cut(s) 74, 1070
AoxI GGCC 1 cut(s) 824
ApaLI GTGCAC 1 cut(s) 964
ApeKI GCWGC 8 cut(s) 71, 368, 481, 484, 680, 683, 686, 1037
ApoI RAATTY 1 cut(s) 381
AseI ATTAAT 1 cut(s) 1094
Asp700I GAANNNNTTC 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 47, 821
BaeGI GKGCMC 1 cut(s) 968
BalI TGGCCA 1 cut(s) 826
BanII GRGCYC 2 cut(s) 68, 1053
Bbv12I GWGCWC 2 cut(s) 477, 968
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 8 cut(s) 83, 355, 493, 496, 667, 670, 673, 1049
BccI CCATC 6 cut(s) 26, 32, 100, 215, 269, 743
BciT130I CCWGG 2 cut(s) 632, 849
BcoDI GTCTC 2 cut(s) 282, 1134
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 372
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 9 cut(s) 72, 299, 369, 482, 485, 681, 684, 687, 1038
BlsI GCNGC 9 cut(s) 73, 300, 370, 483, 486, 682, 685, 688, 1039
Bme1390I CCNGG 2 cut(s) 632, 849
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 899
BmiI GGNNCC 1 cut(s) 628
BmrFI CCNGG 2 cut(s) 632, 849
BmsI GCATC 7 cut(s) 103, 243, 427, 673, 733, 976, 1105
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 68, 1037
Bsa29I ATCGAT 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 630, 631
Bsc4I CCNNNNNNNGG 1 cut(s) 854
Bse1I ACTGG 2 cut(s) 389, 555
Bse3DI GCAATG 1 cut(s) 1125
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 632, 849
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 630, 631
BseGI GGATG 6 cut(s) 111, 118, 226, 724, 1084, 1213
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 854
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 3 cut(s) 171, 502, 1002
BseNI ACTGG 2 cut(s) 389, 555
BseRI GAGGAG 3 cut(s) 29, 485, 1185
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 8 cut(s) 83, 355, 493, 496, 667, 670, 673, 1049
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 826
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 477, 968
BslI CCNNNNNNNGG 1 cut(s) 854
BsmAI GTCTC 2 cut(s) 282, 1134
BsnI GGCC 1 cut(s) 826
Bso31I GGTCTC 1 cut(s) 282
Bsp1286I GDGCHC 4 cut(s) 68, 477, 968, 1053
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 1 cut(s) 973
BspACI CCGC 5 cut(s) 97, 298, 689, 728, 1162
BspANI GGCC 1 cut(s) 826
BspCNI CTCAG 3 cut(s) 172, 501, 1003
BspDI ATCGAT 1 cut(s) 273
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 60, 667
BspLI GGNNCC 1 cut(s) 628
BspTI CTTAAG 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 1125
BsrGI TGTACA 1 cut(s) 145
BsrI ACTGG 2 cut(s) 389, 555
BssECI CCNNGG 2 cut(s) 630, 631
BssMI GATC 1 cut(s) 973
Bst2UI CCWGG 2 cut(s) 632, 849
Bst4CI ACNGT 3 cut(s) 649, 868, 958
BstAFI CTTAAG 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 145
BstBAI YACGTR 1 cut(s) 878
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 3 cut(s) 180, 488, 1011
BstF5I GGATG 6 cut(s) 111, 118, 226, 724, 1084, 1213
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 1 cut(s) 976
BstMAI GTCTC 2 cut(s) 282, 1134
BstMBI GATC 1 cut(s) 973
BstMWI GCNNNNNNNGC 5 cut(s) 80, 374, 481, 686, 692
BstNI CCWGG 2 cut(s) 632, 849
BstNSI RCATGY 2 cut(s) 641, 1202
BstSCI CCNGG 2 cut(s) 630, 847
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 968
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 8 cut(s) 83, 355, 493, 496, 667, 670, 673, 1049
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 1 cut(s) 826
BsuTUI ATCGAT 1 cut(s) 273
BtrI CACGTC 1 cut(s) 899
BtsCI GGATG 6 cut(s) 111, 118, 226, 724, 1084, 1213
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 639
CaiI CAGNNNCTG 2 cut(s) 74, 1070
CciI TCATGA 2 cut(s) 60, 667
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 7 cut(s) 146, 165, 209, 548, 801, 954, 1085
CviAII CATG 8 cut(s) 61, 149, 638, 661, 668, 983, 1112, 1199
CviQI GTAC 7 cut(s) 146, 165, 209, 548, 801, 954, 1085
DdeI CTNAG 3 cut(s) 180, 488, 1011
DpnI GATC 1 cut(s) 975
DpnII GATC 1 cut(s) 973
DraI TTTAAA 1 cut(s) 1137
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 824
Eam1105I GACNNNNNGTC 1 cut(s) 502
Eco24I GRGCYC 2 cut(s) 68, 1053
Eco31I GGTCTC 1 cut(s) 282
Eco32I GATATC 1 cut(s) 816
Eco57I CTGAAG 2 cut(s) 1049, 1212
EcoRII CCWGG 2 cut(s) 630, 847
EcoRV GATATC 1 cut(s) 816
EcoT22I ATGCAT 1 cut(s) 666
EcoT38I GRGCYC 2 cut(s) 68, 1053
FaeI CATG 8 cut(s) 64, 152, 641, 664, 671, 986, 1115, 1202
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 8 cut(s) 60, 148, 637, 660, 667, 982, 1111, 1198
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 9 cut(s) 72, 299, 369, 482, 485, 681, 684, 687, 1038
FokI GGATG 5 cut(s) 118, 125, 233, 711, 1091
FriOI GRGCYC 2 cut(s) 68, 1053
Fsp4HI GCNGC 9 cut(s) 72, 299, 369, 482, 485, 681, 684, 687, 1038
FspBI CTAG 1 cut(s) 174
GluI GCNGC 9 cut(s) 72, 299, 369, 482, 485, 681, 684, 687, 1038
GsaI CCCAGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 826
Hin1II CATG 8 cut(s) 64, 152, 641, 664, 671, 986, 1115, 1202
HinfI GANTC 3 cut(s) 526, 776, 1007
HphI GGTGA 2 cut(s) 47, 821
Hpy166II GTNNAC 2 cut(s) 351, 966
Hpy188I TCNGA 2 cut(s) 491, 1012
Hpy188III TCNNGA 6 cut(s) 47, 61, 434, 668, 1054, 1076
Hpy8I GTNNAC 2 cut(s) 351, 966
HpyAV CCTTC 2 cut(s) 253, 326
HpyCH4III ACNGT 3 cut(s) 649, 868, 958
HpyCH4IV ACGT 2 cut(s) 877, 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 374, 481, 686, 692
HpyF3I CTNAG 3 cut(s) 180, 488, 1011
HpySE526I ACGT 2 cut(s) 877, 898
Hsp92II CATG 8 cut(s) 64, 152, 641, 664, 671, 986, 1115, 1202
Kzo9I GATC 1 cut(s) 973
LmnI GCTCC 2 cut(s) 472, 1103
Lsp1109I GCAGC 8 cut(s) 83, 355, 493, 496, 667, 670, 673, 1049
LweI GCATC 7 cut(s) 103, 243, 427, 673, 733, 976, 1105
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 877, 898
MaeIII GTNAC 5 cut(s) 424, 463, 613, 764, 1181
MalI GATC 1 cut(s) 975
MboI GATC 1 cut(s) 973
MboII GAAGA 2 cut(s) 341, 1205
MfeI CAATTG 2 cut(s) 882, 969
MhlI GDGCHC 4 cut(s) 68, 477, 968, 1053
MlsI TGGCCA 1 cut(s) 826
MluCI AATT 6 cut(s) 281, 381, 429, 882, 917, 969
MluNI TGGCCA 1 cut(s) 826
Mox20I TGGCCA 1 cut(s) 826
Mph1103I ATGCAT 1 cut(s) 666
MroXI GAANNNNTTC 1 cut(s) 342
MscI TGGCCA 1 cut(s) 826
MseI TTAA 4 cut(s) 444, 582, 1094, 1136
MslI CAYNNNNRTG 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 826
MspA1I CMGCKG 2 cut(s) 74, 1164
MspCI CTTAAG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 632, 849
MunI CAATTG 2 cut(s) 882, 969
MvaI CCWGG 2 cut(s) 632, 849
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 5 cut(s) 80, 374, 481, 686, 692
NdeII GATC 1 cut(s) 973
NlaIII CATG 8 cut(s) 64, 152, 641, 664, 671, 986, 1115, 1202
NlaIV GGNNCC 1 cut(s) 628
NmuCI GTSAC 2 cut(s) 424, 1181
NsiI ATGCAT 1 cut(s) 666
NspI RCATGY 2 cut(s) 641, 1202
PaeI GCATGC 1 cut(s) 641
PagI TCATGA 2 cut(s) 60, 667
PasI CCCWGGG 1 cut(s) 631
PciI ACATGT 1 cut(s) 1198
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 3 cut(s) 526, 776, 1007
PfoI TCCNGGA 1 cut(s) 847
PkrI GCNGC 9 cut(s) 73, 300, 370, 483, 486, 682, 685, 688, 1039
Ppu21I YACGTR 1 cut(s) 878
PscI ACATGT 1 cut(s) 1198
PshBI ATTAAT 1 cut(s) 1094
Psp6I CCWGG 2 cut(s) 630, 847
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 630, 847
PspN4I GGNNCC 1 cut(s) 628
PstNI CAGNNNCTG 2 cut(s) 74, 1070
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 7 cut(s) 147, 166, 210, 549, 802, 955, 1086
RsaNI GTAC 7 cut(s) 146, 165, 209, 548, 801, 954, 1085
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 4 cut(s) 444, 582, 1094, 1136
SatI GCNGC 9 cut(s) 72, 299, 369, 482, 485, 681, 684, 687, 1038
Sau3AI GATC 1 cut(s) 973
ScrFI CCNGG 2 cut(s) 632, 849
SduI GDGCHC 4 cut(s) 68, 477, 968, 1053
SfaNI GCATC 7 cut(s) 103, 243, 427, 673, 733, 976, 1105
SfcI CTRYAG 1 cut(s) 372
SmiI ATTTAAAT 1 cut(s) 1137
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 3 cut(s) 47, 443, 1052
SmoI CTYRAG 3 cut(s) 47, 443, 1052
SphI GCATGC 1 cut(s) 641
Sse9I AATT 6 cut(s) 281, 381, 429, 882, 917, 969
SsiI CCGC 5 cut(s) 97, 298, 689, 728, 1162
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 630, 847
SwaI ATTTAAAT 1 cut(s) 1137
TaaI ACNGT 3 cut(s) 649, 868, 958
TaiI ACGT 2 cut(s) 880, 901
TaqI TCGA 4 cut(s) 154, 273, 818, 1168
TasI AATT 6 cut(s) 281, 381, 429, 882, 917, 969
TatI WGTACW 2 cut(s) 145, 547
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 526, 776, 1007
Tru1I TTAA 4 cut(s) 444, 582, 1094, 1136
Tru9I TTAA 4 cut(s) 444, 582, 1094, 1136
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 2 cut(s) 424, 1181
TseI GCWGC 8 cut(s) 71, 368, 481, 484, 680, 683, 686, 1037
Tsp45I GTSAC 2 cut(s) 424, 1181
TspDTI ATGAA 4 cut(s) 49, 342, 346, 1095
TspRI CASTG 1 cut(s) 405
Vha464I CTTAAG 1 cut(s) 443
VneI GTGCAC 1 cut(s) 964
VspI ATTAAT 1 cut(s) 1094
XapI RAATTY 1 cut(s) 381
XceI RCATGY 2 cut(s) 641, 1202
XcmI CCANNNNNNNNNTGG 2 cut(s) 507, 638
XmiI GTMKAC 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.