Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2369555 .. 2371036

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGAAGTTGGGATAGTACTTGTCTGCTAAATGGGATAATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTGATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGCTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATACAATGGCTCTGTCTCATTTAACTATGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTACTGGATGATATGATGTTTGGGCATCTGGTTTGGCAATCCTGGCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

248

Amino Acids

27.34

Weight (kDa)

6.04

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	203, 655
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	542, 705
AfaI	GTAC	5 cut(s)	19, 63, 315, 579, 696
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	2 cut(s)	50, 300
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	2 cut(s)	144, 734
AluBI	AGCT	6 cut(s)	107, 398, 452, 508, 520, 533
AluI	AGCT	6 cut(s)	107, 398, 452, 508, 520, 533
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	627
Alw44I	GTGCAC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	56, 337
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	4 cut(s)	194, 197, 200, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AseI	ATTAAT	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	334
AsuII	TTCGAA	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	546
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	4 cut(s)	181, 184, 187, 542
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	2 cut(s)	146, 736
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	4 cut(s)	195, 198, 201, 531
BlsI	GCNGC	4 cut(s)	196, 199, 202, 532
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	146, 736
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	146, 736
BmsI	GCATC	3 cut(s)	247, 469, 727
Bpu14I	TTCGAA	1 cut(s)	515
BpuEI	CTTGAG	2 cut(s)	228, 530
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	144, 145
Bse1I	ACTGG	2 cut(s)	69, 702
BseBI	CCWGG	2 cut(s)	146, 736
BseDI	CCNNGG	2 cut(s)	144, 145
BseGI	GGATG	3 cut(s)	238, 577, 706
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	69, 702
BseRI	GAGGAG	1 cut(s)	678
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	4 cut(s)	181, 184, 187, 542
BshFI	GGCC	2 cut(s)	58, 339
BsiHKAI	GWGCWC	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	2 cut(s)	58, 339
Bsp119I	TTCGAA	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	461, 546
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	203, 655
BspANI	GGCC	2 cut(s)	58, 339
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	69, 702
BssECI	CCNNGG	2 cut(s)	144, 145
BssMI	GATC	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	146, 736
Bst4CI	ACNGT	3 cut(s)	163, 318, 361
BstBAI	YACGTR	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	504
BstF5I	GGATG	3 cut(s)	238, 577, 706
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 206, 736
BstNI	CCWGG	2 cut(s)	146, 736
BstNSI	RCATGY	2 cut(s)	155, 695
BstSCI	CCNGG	2 cut(s)	144, 734
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	4 cut(s)	181, 184, 187, 542
BsuRI	GGCC	2 cut(s)	58, 339
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	238, 577, 706
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	5 cut(s)	18, 62, 314, 578, 695
CviAII	CATG	6 cut(s)	152, 175, 385, 476, 605, 692
CviQI	GTAC	5 cut(s)	18, 62, 314, 578, 695
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	546
Eco32I	GATATC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	542, 705
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	144, 734
EcoRV	GATATC	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	546
FaeI	CATG	6 cut(s)	155, 178, 388, 479, 608, 695
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	6 cut(s)	151, 174, 384, 475, 604, 691
Fnu4HI	GCNGC	4 cut(s)	195, 198, 201, 531
FokI	GGATG	3 cut(s)	225, 584, 713
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	4 cut(s)	195, 198, 201, 531
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	4 cut(s)	195, 198, 201, 531
HaeIII	GGCC	2 cut(s)	58, 339
Hin1II	CATG	6 cut(s)	155, 178, 388, 479, 608, 695
HinfI	GANTC	2 cut(s)	290, 500
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	3 cut(s)	245, 547, 569
Hpy8I	GTNNAC	1 cut(s)	459
HpyCH4III	ACNGT	3 cut(s)	163, 318, 361
HpyCH4IV	ACGT	2 cut(s)	370, 391
HpyCH4V	TGCA	6 cut(s)	273, 346, 374, 459, 482, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 206, 736
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	2 cut(s)	370, 391
Hsp92II	CATG	6 cut(s)	155, 178, 388, 479, 608, 695
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	4 cut(s)	181, 184, 187, 542
LweI	GCATC	3 cut(s)	247, 469, 727
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	370, 391
MaeIII	GTNAC	4 cut(s)	127, 278, 349, 674
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	1 cut(s)	698
MfeI	CAATTG	2 cut(s)	375, 462
MhlI	GDGCHC	2 cut(s)	461, 546
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	4 cut(s)	39, 375, 410, 462
MluNI	TGGCCA	1 cut(s)	339
MnlI	CCTC	5 cut(s)	93, 131, 252, 656, 659
Mox20I	TGGCCA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	3 cut(s)	96, 587, 629
Msp20I	TGGCCA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	657
MspR9I	CCNGG	2 cut(s)	146, 736
MunI	CAATTG	2 cut(s)	375, 462
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	2 cut(s)	146, 736
MwoI	GCNNNNNNNGC	3 cut(s)	200, 206, 736
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	6 cut(s)	155, 178, 388, 479, 608, 695
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	674
NspI	RCATGY	2 cut(s)	155, 695
NspV	TTCGAA	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	155
PasI	CCCWGGG	1 cut(s)	145
PciI	ACATGT	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	2 cut(s)	290, 500
PkrI	GCNGC	4 cut(s)	196, 199, 202, 532
Ppu21I	YACGTR	1 cut(s)	371
PscI	ACATGT	1 cut(s)	691
PshBI	ATTAAT	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	144, 734
PspGI	CCWGG	2 cut(s)	144, 734
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	5 cut(s)	19, 63, 315, 579, 696
RsaNI	GTAC	5 cut(s)	18, 62, 314, 578, 695
SaqAI	TTAA	3 cut(s)	96, 587, 629
SatI	GCNGC	4 cut(s)	195, 198, 201, 531
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	146, 736
SduI	GDGCHC	2 cut(s)	461, 546
SfaNI	GCATC	3 cut(s)	247, 469, 727
SfuI	TTCGAA	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	243, 545
SmoI	CTYRAG	2 cut(s)	243, 545
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	4 cut(s)	39, 375, 410, 462
SsiI	CCGC	2 cut(s)	203, 655
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	144, 734
TaaI	ACNGT	3 cut(s)	163, 318, 361
TaiI	ACGT	2 cut(s)	373, 394
TaqI	TCGA	3 cut(s)	331, 515, 661
TasI	AATT	4 cut(s)	39, 375, 410, 462
TatI	WGTACW	3 cut(s)	17, 61, 694
TfiI	GAWTC	2 cut(s)	290, 500
Tru1I	TTAA	3 cut(s)	96, 587, 629
Tru9I	TTAA	3 cut(s)	96, 587, 629
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	4 cut(s)	194, 197, 200, 530
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	2 cut(s)	588, 732
VneI	GTGCAC	1 cut(s)	457
VspI	ATTAAT	1 cut(s)	587
XceI	RCATGY	2 cut(s)	155, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.