Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2298853 .. 2299415

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGATTCGTGCACAATTGATCGTAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGTTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTGGATGATGATGATGTTTGGGCATCTGGTTGGGCAATCCTAGCATTCATAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

5.73

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	113, 276
AfaI	GTAC	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	262
AjiI	CACGTC	1 cut(s)	8
AluBI	AGCT	4 cut(s)	14, 91, 104, 328
AluI	AGCT	4 cut(s)	14, 91, 104, 328
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	198, 314
Alw44I	GTGCAC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	134
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	198, 314
BfaI	CTAG	2 cut(s)	308, 331
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	8
BmsI	GCATC	2 cut(s)	169, 299
BpuEI	CTTGAG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	148, 277
BseMI	GCAATG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	198, 314
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	77, 117
Bsp143I	GATC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	189
BssMI	GATC	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	204, 324
BstF5I	GGATG	2 cut(s)	148, 277
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	198, 314
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	148, 277
CaiI	CAGNNNCTG	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	176, 263
CviJI	RGCY	6 cut(s)	14, 91, 104, 115, 188, 328
CviKI_1	RGCY	6 cut(s)	14, 91, 104, 115, 188, 328
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	204, 324
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	113, 276
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	2 cut(s)	179, 266
FaiI	YATR	7 cut(s)	22, 52, 177, 215, 242, 264, 317
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	175, 262
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	155, 284
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	308, 331
GluI	GCNGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	179, 266
HinfI	GANTC	2 cut(s)	68, 322
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	118, 140
Hpy8I	GTNNAC	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	75, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	204, 324
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	179, 266
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	6 cut(s)	114, 125, 156, 165, 267, 279
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	169, 299
MaeI	CTAG	2 cut(s)	308, 331
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	269
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	77, 117
MluCI	AATT	2 cut(s)	26, 78
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	2 cut(s)	227, 230
MseI	TTAA	2 cut(s)	158, 200
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	179, 266
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PscI	ACATGT	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	158, 200
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	316
SduI	GDGCHC	2 cut(s)	77, 117
SetI	ASST	8 cut(s)	10, 16, 93, 106, 133, 154, 210, 330
SfaNI	GCATC	2 cut(s)	169, 299
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	26, 78
SspMI	CTAG	2 cut(s)	308, 331
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	232
TasI	AATT	2 cut(s)	26, 78
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	158, 200
Tru9I	TTAA	2 cut(s)	158, 200
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	159, 304
TspGWI	ACGGA	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	158
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	308, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.