Rw1G000810

Allantoate

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
1148347 .. 1151496
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000810.1

Sequence Viewer

Length: 1266 bp
ATGACATTTGTTACACGTGTCTCCCAGAGAACCCATTCCGCCATTAGTCCCACCTCCGTTTTGGCTCTGGCTTGCCATTTCTTGCTTCTGGTCTCTTCAGCCATCACTCCCTGTTTTGGATTTTCTGAGAAAGAGAGGAGGGGCTTGTGTCAGGAAATATTGAGAGATGAAGATGTGGCAAGACTTCATCAGCTTGGAAAGGTAAGTGATGGTGATGGTTATCTTGAGAGGATATTCATGAGCCCAGCAGCTGTCAGGGCTGGAAGTCTTATCCTCGAATGGATGGAGGATGCTGGTTTGAGAACGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTACAAATGCTAGTGCTGAGGTTCTAATACTTGGTTCTCATTTGGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATCCAAGATGCTCCTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCTGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGATCGTAAGTCATTTCTGACTTCGAAGCTGAAGTCAGCAGCTTATCTTGGACTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTTCACTTCCCTGAAGAACATGTATTGGATGATGATGTTTGGGCATCTGGTTTGGCAATCCTGGCATTCATAGAGACTCAGCTCTAG

Protein Analysis

421

Amino Acids

45.79

Weight (kDa)

5.4

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
M20_dimer PF07687 226 - 338 1.5e-07 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20070 AT4G20070
fragaria_vesca FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica MD10G1228200.v1.1
prunus_persica Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis pycom10g19170
rosa_chinensis RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 431
AciI CCGC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 905
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 4 cut(s) 81, 792, 1103, 1212
AcvI CACGTG 1 cut(s) 17
AfaI GTAC 5 cut(s) 330, 349, 630, 883, 1140
AfiI CCNNNNNNNGG 1 cut(s) 116
AflIII ACRYGT 3 cut(s) 14, 16, 1198
AgsI TTSAA 3 cut(s) 542, 617, 867
AhdI GACNNNNNGTC 1 cut(s) 583
AjiI CACGTC 1 cut(s) 980
AjnI CCWGG 3 cut(s) 711, 928, 1239
AluBI AGCT 9 cut(s) 193, 251, 458, 568, 674, 986, 1081, 1094, 1261
AluI AGCT 9 cut(s) 193, 251, 458, 568, 674, 986, 1081, 1094, 1261
Alw21I GWGCWC 2 cut(s) 558, 1049
Alw26I GTCTC 3 cut(s) 25, 97, 1247
Alw44I GTGCAC 1 cut(s) 1045
AlwNI CAGNNNCTG 2 cut(s) 251, 1124
AoxI GGCC 2 cut(s) 623, 905
ApaLI GTGCAC 1 cut(s) 1045
ApeKI GCWGC 8 cut(s) 248, 449, 562, 565, 761, 764, 767, 1091
ApoI RAATTY 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
AseI ATTAAT 1 cut(s) 1148
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 2 cut(s) 224, 902
AsuII TTCGAA 1 cut(s) 1076
BaeGI GKGCMC 1 cut(s) 1049
BalI TGGCCA 1 cut(s) 907
BanII GRGCYC 1 cut(s) 245
BbrPI CACGTG 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 558, 1049
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 8 cut(s) 260, 436, 574, 577, 748, 751, 754, 1103
BccI CCATC 5 cut(s) 110, 203, 209, 277, 824
BciT130I CCWGG 3 cut(s) 713, 930, 1241
BcoDI GTCTC 3 cut(s) 25, 97, 1247
BfaI CTAG 3 cut(s) 357, 653, 1264
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 8 cut(s) 249, 450, 563, 566, 762, 765, 768, 1092
BlsI GCNGC 8 cut(s) 250, 451, 564, 567, 763, 766, 769, 1093
Bme1390I CCNGG 3 cut(s) 713, 930, 1241
BmeRI GACNNNNNGTC 1 cut(s) 583
BmgBI CACGTC 1 cut(s) 980
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 1 cut(s) 709
BmrFI CCNGG 3 cut(s) 713, 930, 1241
BmsI GCATC 5 cut(s) 280, 508, 814, 1159, 1232
Bpu10I CCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 1076
BpuEI CTTGAG 3 cut(s) 245, 795, 1091
BsaAI YACGTR 2 cut(s) 17, 959
BsaBI GATNNNNATC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 711, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 470, 636
Bse3DI GCAATG 1 cut(s) 1179
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 3 cut(s) 713, 930, 1241
BseDI CCNNGG 2 cut(s) 711, 712
BseGI GGATG 5 cut(s) 288, 295, 805, 1138, 1213
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 3 cut(s) 117, 354, 583
BseNI ACTGG 2 cut(s) 470, 636
BseRI GAGGAG 2 cut(s) 151, 566
BseSI GKGCMC 1 cut(s) 1049
BseXI GCAGC 8 cut(s) 260, 436, 574, 577, 748, 751, 754, 1103
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 2 cut(s) 625, 907
BsiHKAI GWGCWC 2 cut(s) 558, 1049
BslFI GGGAC 2 cut(s) 33, 990
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 3 cut(s) 25, 97, 1247
BsmFI GGGAC 2 cut(s) 33, 990
BsmI GAATGC 1 cut(s) 1244
BsnI GGCC 2 cut(s) 625, 907
Bso31I GGTCTC 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 1076
Bsp1286I GDGCHC 3 cut(s) 245, 558, 1049
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 1 cut(s) 1054
BspACI CCGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 625, 907
BspCNI CTCAG 3 cut(s) 118, 355, 582
BspHI TCATGA 2 cut(s) 237, 748
BspLI GGNNCC 1 cut(s) 709
BspQI GCTCTTC 1 cut(s) 1185
BspT104I TTCGAA 1 cut(s) 1076
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 1179
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 2 cut(s) 470, 636
BssECI CCNNGG 2 cut(s) 711, 712
BssMI GATC 1 cut(s) 1054
Bst2UI CCWGG 3 cut(s) 713, 930, 1241
Bst4CI ACNGT 3 cut(s) 730, 886, 949
Bst6I CTCTTC 2 cut(s) 100, 1185
BstAUI TGTACA 1 cut(s) 328
BstBAI YACGTR 2 cut(s) 17, 959
BstBI TTCGAA 1 cut(s) 1076
BstC8I GCNNGC 2 cut(s) 73, 720
BstDEI CTNAG 5 cut(s) 126, 363, 525, 569, 1257
BstF5I GGATG 5 cut(s) 288, 295, 805, 1138, 1213
BstKTI GATC 1 cut(s) 1057
BstMAI GTCTC 3 cut(s) 25, 97, 1247
BstMBI GATC 1 cut(s) 1054
BstMWI GCNNNNNNNGC 6 cut(s) 257, 455, 562, 767, 773, 1241
BstNI CCWGG 3 cut(s) 713, 930, 1241
BstNSI RCATGY 2 cut(s) 722, 1202
BstSCI CCNGG 3 cut(s) 711, 928, 1239
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 1049
BstV1I GCAGC 8 cut(s) 260, 436, 574, 577, 748, 751, 754, 1103
BsuRI GGCC 2 cut(s) 625, 907
BtrI CACGTC 1 cut(s) 980
BtsCI GGATG 5 cut(s) 288, 295, 805, 1138, 1213
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 1 cut(s) 479
Cac8I GCNNGC 2 cut(s) 73, 720
CaiI CAGNNNCTG 2 cut(s) 251, 1124
CciI TCATGA 2 cut(s) 237, 748
Cfr13I GGNCC 1 cut(s) 623
CseI GACGC 1 cut(s) 734
Csp6I GTAC 5 cut(s) 329, 348, 629, 882, 1139
CviAII CATG 8 cut(s) 238, 332, 719, 742, 749, 973, 1166, 1199
CviQI GTAC 5 cut(s) 329, 348, 629, 882, 1139
DdeI CTNAG 5 cut(s) 126, 363, 525, 569, 1257
DpnI GATC 1 cut(s) 1056
DpnII GATC 1 cut(s) 1054
DriI GACNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 905
Eam1104I CTCTTC 2 cut(s) 100, 1185
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 2 cut(s) 100, 1185
EciI GGCGGA 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 897
Eco57I CTGAAG 4 cut(s) 81, 792, 1103, 1212
Eco72I CACGTG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 3 cut(s) 711, 928, 1239
EcoRV GATATC 1 cut(s) 897
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 8 cut(s) 241, 335, 722, 745, 752, 976, 1169, 1202
FaqI GGGAC 2 cut(s) 33, 990
FatI CATG 8 cut(s) 237, 331, 718, 741, 748, 972, 1165, 1198
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 8 cut(s) 249, 450, 563, 566, 762, 765, 768, 1092
FokI GGATG 5 cut(s) 295, 302, 792, 1145, 1220
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 8 cut(s) 249, 450, 563, 566, 762, 765, 768, 1092
FspBI CTAG 3 cut(s) 357, 653, 1264
GluI GCNGC 8 cut(s) 249, 450, 563, 566, 762, 765, 768, 1092
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 2 cut(s) 625, 907
HgaI GACGC 1 cut(s) 734
Hin1II CATG 8 cut(s) 241, 335, 722, 745, 752, 976, 1169, 1202
HinfI GANTC 4 cut(s) 607, 857, 1104, 1255
HphI GGTGA 2 cut(s) 224, 902
Hpy166II GTNNAC 2 cut(s) 432, 1047
Hpy188I TCNGA 3 cut(s) 127, 572, 1071
Hpy188III TCNNGA 7 cut(s) 152, 224, 238, 749, 812, 1108, 1130
Hpy8I GTNNAC 2 cut(s) 432, 1047
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 3 cut(s) 730, 886, 949
HpyCH4IV ACGT 4 cut(s) 16, 305, 958, 979
HpyCH4V TGCA 7 cut(s) 484, 562, 840, 914, 962, 1047, 1172
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 455, 562, 767, 773, 1241
HpyF3I CTNAG 5 cut(s) 126, 363, 525, 569, 1257
HpySE526I ACGT 4 cut(s) 16, 305, 958, 979
Hsp92II CATG 8 cut(s) 241, 335, 722, 745, 752, 976, 1169, 1202
Kzo9I GATC 1 cut(s) 1054
LguI GCTCTTC 1 cut(s) 1185
LmnI GCTCC 3 cut(s) 526, 553, 1157
Lsp1109I GCAGC 8 cut(s) 260, 436, 574, 577, 748, 751, 754, 1103
LweI GCATC 5 cut(s) 280, 508, 814, 1159, 1232
MaeI CTAG 3 cut(s) 357, 653, 1264
MaeII ACGT 4 cut(s) 16, 305, 958, 979
MaeIII GTNAC 6 cut(s) 10, 505, 544, 694, 845, 937
MalI GATC 1 cut(s) 1056
MboI GATC 1 cut(s) 1054
MboII GAAGA 5 cut(s) 87, 182, 422, 1172, 1205
MfeI CAATTG 2 cut(s) 963, 1050
MhlI GDGCHC 3 cut(s) 245, 558, 1049
MlsI TGGCCA 1 cut(s) 907
MluCI AATT 4 cut(s) 462, 963, 998, 1050
MluNI TGGCCA 1 cut(s) 907
MlyI GAGTC 2 cut(s) 1098, 1249
Mox20I TGGCCA 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 34
MscI TGGCCA 1 cut(s) 907
MseI TTAA 2 cut(s) 663, 1148
Msp20I TGGCCA 1 cut(s) 907
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 3 cut(s) 713, 930, 1241
MunI CAATTG 2 cut(s) 963, 1050
Mva1269I GAATGC 1 cut(s) 1244
MvaI CCWGG 3 cut(s) 713, 930, 1241
MwoI GCNNNNNNNGC 6 cut(s) 257, 455, 562, 767, 773, 1241
NdeII GATC 1 cut(s) 1054
NlaIII CATG 8 cut(s) 241, 335, 722, 745, 752, 976, 1169, 1202
NlaIV GGNNCC 1 cut(s) 709
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 2 cut(s) 722, 1202
NspV TTCGAA 1 cut(s) 1076
PaeI GCATGC 1 cut(s) 722
PagI TCATGA 2 cut(s) 237, 748
PasI CCCWGGG 1 cut(s) 712
PciI ACATGT 1 cut(s) 1198
PciSI GCTCTTC 1 cut(s) 1185
PcsI WCGNNNNNNNCGW 1 cut(s) 882
PctI GAATGC 1 cut(s) 1244
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 607, 857
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 8 cut(s) 250, 451, 564, 567, 763, 766, 769, 1093
PleI GAGTC 2 cut(s) 1098, 1249
PmaCI CACGTG 1 cut(s) 17
PmlI CACGTG 1 cut(s) 17
PpsI GAGTC 2 cut(s) 1098, 1249
Ppu21I YACGTR 2 cut(s) 17, 959
PscI ACATGT 1 cut(s) 1198
PshBI ATTAAT 1 cut(s) 1148
Psp6I CCWGG 3 cut(s) 711, 928, 1239
PspCI CACGTG 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 3 cut(s) 711, 928, 1239
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 1 cut(s) 623
PstNI CAGNNNCTG 2 cut(s) 251, 1124
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 5 cut(s) 330, 349, 630, 883, 1140
RsaNI GTAC 5 cut(s) 329, 348, 629, 882, 1139
SapI GCTCTTC 1 cut(s) 1185
SaqAI TTAA 2 cut(s) 663, 1148
SatI GCNGC 8 cut(s) 249, 450, 563, 566, 762, 765, 768, 1092
Sau3AI GATC 1 cut(s) 1054
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 2 cut(s) 1098, 1249
ScrFI CCNGG 3 cut(s) 713, 930, 1241
SduI GDGCHC 3 cut(s) 245, 558, 1049
SfaNI GCATC 5 cut(s) 280, 508, 814, 1159, 1232
SfcI CTRYAG 1 cut(s) 453
SfuI TTCGAA 1 cut(s) 1076
SmlI CTYRAG 3 cut(s) 224, 810, 1106
SmoI CTYRAG 3 cut(s) 224, 810, 1106
SphI GCATGC 1 cut(s) 722
Sse9I AATT 4 cut(s) 462, 963, 998, 1050
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 159
SspMI CTAG 3 cut(s) 357, 653, 1264
StyD4I CCNGG 3 cut(s) 711, 928, 1239
TaaI ACNGT 3 cut(s) 730, 886, 949
TaiI ACGT 4 cut(s) 19, 308, 961, 982
TaqI TCGA 4 cut(s) 276, 337, 899, 1076
TasI AATT 4 cut(s) 462, 963, 998, 1050
TatI WGTACW 2 cut(s) 328, 628
TfiI GAWTC 2 cut(s) 607, 857
Tru1I TTAA 2 cut(s) 663, 1148
Tru9I TTAA 2 cut(s) 663, 1148
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 8 cut(s) 248, 449, 562, 565, 761, 764, 767, 1091
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 7 cut(s) 176, 183, 226, 423, 427, 1149, 1237
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 486
VneI GTGCAC 1 cut(s) 1045
VspI ATTAAT 1 cut(s) 1148
XapI RAATTY 1 cut(s) 462
XceI RCATGY 2 cut(s) 722, 1202
XcmI CCANNNNNNNNNTGG 3 cut(s) 58, 588, 719
XmiI GTMKAC 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 3 cut(s) 357, 653, 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.