Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2632641 .. 2634459

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54604

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTCTGTTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAACCTCCATTGAAGTTTCAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTACTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAACATTCACAGTAGATTTACGTGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

138

Amino Acids

14.96

Weight (kDa)

6.5

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	1 cut(s)	216
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	3 cut(s)	101, 128, 203
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	44, 154, 260
AluI	AGCT	3 cut(s)	44, 154, 260
Alw21I	GWGCWC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	35, 148, 151, 353
ApoI	RAATTY	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	4 cut(s)	22, 160, 163, 340
BciT130I	CCWGG	1 cut(s)	299
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	110
BisI	GCNGC	4 cut(s)	36, 149, 152, 354
BlsI	GCNGC	4 cut(s)	37, 150, 153, 355
Bme1390I	CCNGG	1 cut(s)	299
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	297, 298
Bse1I	ACTGG	2 cut(s)	56, 222
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	297, 298
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	2 cut(s)	56, 222
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	4 cut(s)	22, 160, 163, 340
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	295
BspTI	CTTAAG	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	56, 222
BssECI	CCNNGG	2 cut(s)	297, 298
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	2 cut(s)	316, 398
BstAFI	CTTAAG	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 148, 353, 359
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	22, 160, 163, 340
BsuRI	GGCC	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	306
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	305, 328, 335
CviJI	RGCY	7 cut(s)	44, 154, 211, 260, 347, 362, 381
CviKI_1	RGCY	7 cut(s)	44, 154, 211, 260, 347, 362, 381
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	1 cut(s)	155
DriI	GACNNNNNGTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	308, 331, 338
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	3 cut(s)	304, 327, 334
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	4 cut(s)	36, 149, 152, 354
Fsp4HI	GCNGC	4 cut(s)	36, 149, 152, 354
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	4 cut(s)	36, 149, 152, 354
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	308, 331, 338
HinfI	GANTC	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	136, 158
Hpy188III	TCNNGA	2 cut(s)	101, 335
Hpy8I	GTNNAC	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	316, 398
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	3 cut(s)	70, 148, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 148, 353, 359
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	308, 331, 338
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	8 cut(s)	30, 69, 203, 225, 246, 284, 294, 311
Lsp1109I	GCAGC	4 cut(s)	22, 160, 163, 340
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	3 cut(s)	91, 280, 386
MfeI	CAATTG	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	48, 96, 412
MnlI	CCTC	4 cut(s)	130, 130, 246, 284
MseI	TTAA	2 cut(s)	111, 249
MspCI	CTTAAG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	4 cut(s)	41, 148, 353, 359
NlaIII	CATG	3 cut(s)	308, 331, 338
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PagI	TCATGA	1 cut(s)	334
PasI	CCCWGGG	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	4 cut(s)	37, 150, 153, 355
Ppu21I	YACGTR	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	111, 249
SatI	GCNGC	4 cut(s)	36, 149, 152, 354
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	7 cut(s)	46, 122, 156, 262, 282, 295, 410
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	3 cut(s)	48, 96, 412
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	316, 398
TaiI	ACGT	1 cut(s)	410
TasI	AATT	3 cut(s)	48, 96, 412
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	111, 249
Tru9I	TTAA	2 cut(s)	111, 249
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	4 cut(s)	35, 148, 151, 353
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	48
XceI	RCATGY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	2 cut(s)	174, 305
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.