Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023070.1

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2391 .. 6402

Gene Structure 4012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023070.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgtattactacatgacagggcgacatgggcttgatcctgatatgcacactcagtgtgccatgtctgacctagcgaggatgcgagtaagtgatggttatcttgacaggatattcatgagcccagcagccgtgagggctggaaatcttatccgcgaatggatggaggatgctggtgggttgattgcttgggaaatgtacatggtcgagttgagggtaggaatgctagtaacattcacagtagatttacgtgcaattgatgacatgggacgtgaagctgttgtatatgaattatctaaccgattgtatcaaatatgtgataggcattcagtttcgtgcacaattgatcgtaagcatgatacaaatgcagtcatttgcgattctgagctgactttgaagctgaagtctgcggcttatcttgggctcaagagaatgaaaggttctgttcaggatgaagtacctgtattaatgagtggagcaggacatgatgcaatggctctgtctcatttaactaaggtgggtatgctttttgtccgctgtcgaggaggcataagtcactcccctgaagaacatgtattggatgatgatgtttgggcgtctggtttggcaatcctggcattcattgagactgagctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

211

Amino Acids

23.64

Weight (kDa)

5.31

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	151, 407, 532
AclWI	GGATC	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	419, 582
AcyI	GRCGYC	1 cut(s)	593
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	197, 456
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	394
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	4 cut(s)	275, 385, 397, 631
AluI	AGCT	4 cut(s)	275, 385, 397, 631
Alw21I	GWGCWC	2 cut(s)	338, 633
Alw26I	GTCTC	2 cut(s)	504, 617
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	125
AseI	ATTAAT	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	338
BanII	GRGCYC	3 cut(s)	122, 423, 633
Bbv12I	GWGCWC	2 cut(s)	338, 633
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	86, 154
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	504, 617
BfaI	CTAG	3 cut(s)	71, 224, 634
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	126, 408
BlsI	GCNGC	2 cut(s)	127, 409
Bme1390I	CCNGG	1 cut(s)	611
BmgBI	CACGTC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	3 cut(s)	69, 157, 475
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	593
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	611
BseGI	GGATG	5 cut(s)	84, 165, 172, 454, 583
BseJI	GATNNNNATC	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	3 cut(s)	65, 372, 618
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	338, 633
BslFI	GGGAC	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	504, 617
BsmFI	GGGAC	1 cut(s)	279
BsmI	GAATGC	3 cut(s)	225, 322, 614
Bsp1286I	GDGCHC	4 cut(s)	122, 338, 423, 633
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	34, 343
BspACI	CCGC	3 cut(s)	151, 407, 532
BspCNI	CTCAG	3 cut(s)	64, 373, 619
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	114
BspPI	GGATC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	195
BssMI	GATC	2 cut(s)	34, 343
BssNI	GRCGYC	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	248
BstDEI	CTNAG	4 cut(s)	51, 381, 510, 627
BstF5I	GGATG	5 cut(s)	84, 165, 172, 454, 583
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	2 cut(s)	37, 346
BstMAI	GTCTC	2 cut(s)	504, 617
BstMBI	GATC	2 cut(s)	34, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 134, 611
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	5 cut(s)	84, 165, 172, 454, 583
BtsIMutI	CAGTG	1 cut(s)	59
CciI	TCATGA	1 cut(s)	114
CseI	GACGC	1 cut(s)	582
Csp6I	GTAC	2 cut(s)	196, 455
CviAII	CATG	9 cut(s)	13, 26, 61, 115, 199, 262, 353, 482, 569
CviQI	GTAC	2 cut(s)	196, 455
DdeI	CTNAG	4 cut(s)	51, 381, 510, 627
DpnI	GATC	2 cut(s)	36, 345
DpnII	GATC	2 cut(s)	34, 343
DraIII	CACNNNGTG	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	631
Eco24I	GRGCYC	3 cut(s)	122, 423, 633
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	419, 582
EcoICRI	GAGCTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	609
EcoT38I	GRGCYC	3 cut(s)	122, 423, 633
FaeI	CATG	9 cut(s)	16, 29, 64, 118, 202, 265, 356, 485, 572
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	9 cut(s)	12, 25, 60, 114, 198, 261, 352, 481, 568
Fnu4HI	GCNGC	2 cut(s)	126, 408
FokI	GGATG	5 cut(s)	91, 172, 179, 461, 590
FriOI	GRGCYC	3 cut(s)	122, 423, 633
Fsp4HI	GCNGC	2 cut(s)	126, 408
FspBI	CTAG	3 cut(s)	71, 224, 634
GluI	GCNGC	2 cut(s)	126, 408
GsaI	CCCAGC	1 cut(s)	125
HgaI	GACGC	1 cut(s)	582
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	9 cut(s)	16, 29, 64, 118, 202, 265, 356, 485, 572
HinfI	GANTC	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	2 cut(s)	67, 382
Hpy188III	TCNNGA	5 cut(s)	38, 101, 115, 424, 446
Hpy8I	GTNNAC	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	247, 268
HpyCH4V	TGCA	5 cut(s)	46, 251, 336, 365, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 134, 611
HpyF3I	CTNAG	4 cut(s)	51, 381, 510, 627
HpySE526I	ACGT	2 cut(s)	247, 268
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	9 cut(s)	16, 29, 64, 118, 202, 265, 356, 485, 572
Kzo9I	GATC	2 cut(s)	34, 343
LmnI	GCTCC	1 cut(s)	473
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	3 cut(s)	69, 157, 475
MaeI	CTAG	3 cut(s)	71, 224, 634
MaeII	ACGT	2 cut(s)	247, 268
MaeIII	GTNAC	2 cut(s)	226, 551
MalI	GATC	2 cut(s)	36, 345
MboI	GATC	2 cut(s)	34, 343
MboII	GAAGA	1 cut(s)	575
MfeI	CAATTG	2 cut(s)	252, 339
MhlI	GDGCHC	4 cut(s)	122, 338, 423, 633
MluCI	AATT	3 cut(s)	252, 287, 339
MnlI	CCTC	6 cut(s)	69, 126, 157, 204, 533, 536
MseI	TTAA	2 cut(s)	464, 506
MspA1I	CMGCKG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	611
MunI	CAATTG	2 cut(s)	252, 339
Mva1269I	GAATGC	3 cut(s)	225, 322, 614
MvaI	CCWGG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	28, 134, 611
NdeII	GATC	2 cut(s)	34, 343
NlaIII	CATG	9 cut(s)	16, 29, 64, 118, 202, 265, 356, 485, 572
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	572
PagI	TCATGA	1 cut(s)	114
PciI	ACATGT	1 cut(s)	568
PctI	GAATGC	3 cut(s)	225, 322, 614
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	127, 409
Ppu21I	YACGTR	1 cut(s)	248
PscI	ACATGT	1 cut(s)	568
PshBI	ATTAAT	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	609
RsaI	GTAC	2 cut(s)	197, 456
RsaNI	GTAC	2 cut(s)	196, 455
SacI	GAGCTC	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	464, 506
SatI	GCNGC	2 cut(s)	126, 408
Sau3AI	GATC	2 cut(s)	34, 343
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	4 cut(s)	122, 338, 423, 633
SfaNI	GCATC	3 cut(s)	69, 157, 475
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	252, 287, 339
SsiI	CCGC	3 cut(s)	151, 407, 532
SspMI	CTAG	3 cut(s)	71, 224, 634
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	250, 271
TaqI	TCGA	2 cut(s)	204, 538
TasI	AATT	3 cut(s)	252, 287, 339
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	464, 506
Tru9I	TTAA	2 cut(s)	464, 506
TscAI	CASTG	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	5 cut(s)	103, 300, 446, 465, 607
TspRI	CASTG	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	334
VspI	ATTAAT	1 cut(s)	464
XceI	RCATGY	1 cut(s)	572
XspI	CTAG	3 cut(s)	71, 224, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.