Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2459514 .. 2463962

Gene Structure 4449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTATACCTTGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGGACTGCAAATAACTGATAAAAGTGGTGTGACAATCCAAGATGCTCCTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGAAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGATCCCAGGGGCATGCTGGATCAGTTCCAATGTCCATGCGTCATGACCGTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAATATTTTCTGTCTTTTGATGGTCGATGCAAAAGTTACTTATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCATGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTTAGCAGATTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTTCCCTGAAGAACATGTATTGGAGGATGATGTTTGGGCATCTGGTTTGGCAATCCTGGCATTCATAGAGACTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

315

Amino Acids

34.85

Weight (kDa)

5.82

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	5 - 302	2e-07	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	2 cut(s)	392, 844
AclWI	GGATC	3 cut(s)	324, 337, 355
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	2 cut(s)	731, 894
AfaI	GTAC	3 cut(s)	252, 504, 768
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	3 cut(s)	164, 239, 489
AhdI	GACNNNNNGTC	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	581
AjnI	CCWGG	2 cut(s)	333, 921
AluBI	AGCT	7 cut(s)	80, 190, 296, 587, 697, 709, 943
AluI	AGCT	7 cut(s)	80, 190, 296, 587, 697, 709, 943
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	816, 929
AlwI	GGATC	3 cut(s)	324, 337, 355
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	245, 526
ApeKI	GCWGC	6 cut(s)	71, 184, 187, 383, 386, 389
ApoI	RAATTY	1 cut(s)	84
AseI	ATTAAT	1 cut(s)	776
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	523
AsuII	TTCGAA	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	6 cut(s)	58, 196, 199, 370, 373, 376
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	335, 923
BcoDI	GTCTC	2 cut(s)	816, 929
BfaI	CTAG	2 cut(s)	275, 946
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	6 cut(s)	72, 185, 188, 384, 387, 390
BlsI	GCNGC	6 cut(s)	73, 186, 189, 385, 388, 391
Bme1390I	CCNGG	2 cut(s)	335, 923
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	335, 923
BmsI	GCATC	6 cut(s)	130, 436, 449, 658, 787, 914
Bpu14I	TTCGAA	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	333, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	92, 258
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	2 cut(s)	335, 923
BseDI	CCNNGG	2 cut(s)	333, 334
BseGI	GGATG	3 cut(s)	427, 766, 898
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	205, 684
BseNI	ACTGG	2 cut(s)	92, 258
BseRI	GAGGAG	2 cut(s)	188, 867
BseXI	GCAGC	6 cut(s)	58, 196, 199, 370, 373, 376
BshFI	GGCC	2 cut(s)	247, 528
BsiHKAI	GWGCWC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	816, 929
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	2 cut(s)	247, 528
Bsp119I	TTCGAA	1 cut(s)	704
Bsp1286I	GDGCHC	2 cut(s)	180, 735
Bsp143I	GATC	3 cut(s)	329, 347, 655
BspACI	CCGC	2 cut(s)	392, 844
BspANI	GGCC	2 cut(s)	247, 528
BspCNI	CTCAG	2 cut(s)	204, 685
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	3 cut(s)	324, 337, 355
BspT104I	TTCGAA	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	2 cut(s)	92, 258
BssECI	CCNNGG	2 cut(s)	333, 334
BssMI	GATC	3 cut(s)	329, 347, 655
Bst2UI	CCWGG	2 cut(s)	335, 923
Bst4CI	ACNGT	3 cut(s)	377, 507, 550
BstBAI	YACGTR	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	5 cut(s)	147, 191, 693, 822, 939
BstF5I	GGATG	3 cut(s)	427, 766, 898
BstKTI	GATC	3 cut(s)	332, 350, 658
BstMAI	GTCTC	2 cut(s)	816, 929
BstMBI	GATC	3 cut(s)	329, 347, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 184, 389, 395, 923
BstNI	CCWGG	2 cut(s)	335, 923
BstNSI	RCATGY	2 cut(s)	344, 884
BstSCI	CCNGG	2 cut(s)	333, 921
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	6 cut(s)	58, 196, 199, 370, 373, 376
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	247, 528
BtrI	CACGTC	1 cut(s)	581
BtsCI	GGATG	3 cut(s)	427, 766, 898
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	752
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	3 cut(s)	251, 503, 767
CviAII	CATG	8 cut(s)	341, 364, 371, 574, 645, 665, 794, 881
CviQI	GTAC	3 cut(s)	251, 503, 767
DdeI	CTNAG	5 cut(s)	147, 191, 693, 822, 939
DpnI	GATC	3 cut(s)	331, 349, 657
DpnII	GATC	3 cut(s)	329, 347, 655
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	526
Eam1105I	GACNNNNNGTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	735
Eco32I	GATATC	1 cut(s)	518
Eco57I	CTGAAG	2 cut(s)	731, 894
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	333, 921
EcoRV	GATATC	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	8 cut(s)	344, 367, 374, 577, 648, 668, 797, 884
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	8 cut(s)	340, 363, 370, 573, 644, 664, 793, 880
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	6 cut(s)	72, 185, 188, 384, 387, 390
FokI	GGATG	3 cut(s)	414, 773, 905
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	6 cut(s)	72, 185, 188, 384, 387, 390
FspBI	CTAG	2 cut(s)	275, 946
GluI	GCNGC	6 cut(s)	72, 185, 188, 384, 387, 390
HaeIII	GGCC	2 cut(s)	247, 528
HgaI	GACGC	1 cut(s)	356
Hin1II	CATG	8 cut(s)	344, 367, 374, 577, 648, 668, 797, 884
HinfI	GANTC	4 cut(s)	229, 479, 689, 937
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	194, 694
Hpy188III	TCNNGA	5 cut(s)	99, 275, 371, 736, 758
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	3 cut(s)	377, 507, 550
HpyCH4IV	ACGT	2 cut(s)	559, 580
HpyCH4V	TGCA	9 cut(s)	106, 184, 462, 535, 563, 648, 671, 677, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 184, 389, 395, 923
HpyF3I	CTNAG	5 cut(s)	147, 191, 693, 822, 939
HpySE526I	ACGT	2 cut(s)	559, 580
Hsp92II	CATG	8 cut(s)	344, 367, 374, 577, 648, 668, 797, 884
Kzo9I	GATC	3 cut(s)	329, 347, 655
LmnI	GCTCC	3 cut(s)	148, 175, 785
Lsp1109I	GCAGC	6 cut(s)	58, 196, 199, 370, 373, 376
LweI	GCATC	6 cut(s)	130, 436, 449, 658, 787, 914
MaeI	CTAG	2 cut(s)	275, 946
MaeII	ACGT	2 cut(s)	559, 580
MaeIII	GTNAC	6 cut(s)	127, 166, 316, 467, 538, 863
MalI	GATC	3 cut(s)	331, 349, 657
MboI	GATC	3 cut(s)	329, 347, 655
MboII	GAAGA	2 cut(s)	44, 887
MfeI	CAATTG	2 cut(s)	564, 651
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	2 cut(s)	180, 735
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	4 cut(s)	84, 564, 599, 651
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	931
MnlI	CCTC	7 cut(s)	166, 282, 320, 441, 845, 848, 883
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	3 cut(s)	285, 776, 818
Msp20I	TGGCCA	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	846
MspR9I	CCNGG	2 cut(s)	335, 923
MunI	CAATTG	2 cut(s)	564, 651
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	2 cut(s)	335, 923
MwoI	GCNNNNNNNGC	5 cut(s)	77, 184, 389, 395, 923
NdeII	GATC	3 cut(s)	329, 347, 655
NlaIII	CATG	8 cut(s)	344, 367, 374, 577, 648, 668, 797, 884
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	127, 863
NspI	RCATGY	2 cut(s)	344, 884
NspV	TTCGAA	1 cut(s)	704
PaeI	GCATGC	1 cut(s)	344
PagI	TCATGA	1 cut(s)	370
PasI	CCCWGGG	1 cut(s)	334
PciI	ACATGT	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	3 cut(s)	229, 479, 689
PkrI	GCNGC	6 cut(s)	73, 186, 189, 385, 388, 391
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
Ppu21I	YACGTR	1 cut(s)	560
PscI	ACATGT	1 cut(s)	880
PshBI	ATTAAT	1 cut(s)	776
Psp6I	CCWGG	2 cut(s)	333, 921
PspGI	CCWGG	2 cut(s)	333, 921
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	3 cut(s)	252, 504, 768
RsaNI	GTAC	3 cut(s)	251, 503, 767
SaqAI	TTAA	3 cut(s)	285, 776, 818
SatI	GCNGC	6 cut(s)	72, 185, 188, 384, 387, 390
Sau3AI	GATC	3 cut(s)	329, 347, 655
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	931
ScrFI	CCNGG	2 cut(s)	335, 923
SduI	GDGCHC	2 cut(s)	180, 735
SfaNI	GCATC	6 cut(s)	130, 436, 449, 658, 787, 914
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	4 cut(s)	84, 564, 599, 651
SsiI	CCGC	2 cut(s)	392, 844
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	2 cut(s)	275, 946
StyD4I	CCNGG	2 cut(s)	333, 921
TaaI	ACNGT	3 cut(s)	377, 507, 550
TaiI	ACGT	2 cut(s)	562, 583
TaqI	TCGA	4 cut(s)	457, 520, 704, 850
TasI	AATT	4 cut(s)	84, 564, 599, 651
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	3 cut(s)	229, 479, 689
Tru1I	TTAA	3 cut(s)	285, 776, 818
Tru9I	TTAA	3 cut(s)	285, 776, 818
TseFI	GTSAC	2 cut(s)	127, 863
TseI	GCWGC	6 cut(s)	71, 184, 187, 383, 386, 389
Tsp45I	GTSAC	2 cut(s)	127, 863
TspDTI	ATGAA	5 cut(s)	45, 49, 633, 777, 919
VspI	ATTAAT	1 cut(s)	776
XapI	RAATTY	1 cut(s)	84
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	2 cut(s)	344, 884
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 341
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	2 cut(s)	275, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.