Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

15596928 .. 15600363

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAGTTGCTACACGTGTCTCCCACAGAACCCATTCCGCCATTAGTCCCACCTCCGTTTTGGCTCTGGCTTGCCATTTCTTGCTTCTGGTCTCTTCAGCCATCACTCCCTGTTTTGGGTTTTCTGGTGTTGGAGGAGAAGATGAGGGAAACAGAGGAGGGGATTTGTATCCTGAAATTTTGAGGGATGAAGCTGTGTCAAGACTTCATCAGCTTGGAAAGGTAAGTGATGGTGATGGTTATCTTGAGAGGATATTCATGAGCCCAGCAGCTGTGAGGGCTGGAAATCTTATCCGTGAATGGATGGAGGATGCCGGTTTGCGAACGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTAGGAATGCTAGTGCTGAGGCTCTAATACTTGGTTCTCATTTGGATACTGTTGTTGATGCCGGGATATTTGATGGGTCTTTAGGCATCATTTCTGTGGTATCTGCATTGAAGGTTTTGAGTATCAATGGAAAATTGGGAGAACTAAAGCGGCCAGTTGAGGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATAGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTTAAGGTTACGATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCGATGGCTGCTGCTGCAGAAGCCATTGTATTATTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTCACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACTGTTGGTGAGATGTCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGCAAGAAGTTTATCTCTTGACATTGCTAAATTTGATATTAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

373

Amino Acids

39.85

Weight (kDa)

5.65

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	116 - 199	5.7e-08	Peptidase family M28
Peptidase_M20	PF01546	133 - 306	7.5e-06	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	569, 1037
AciI	CCGC	2 cut(s)	39, 517
AcoI	YGGCCR	2 cut(s)	518, 1043
AcsI	RAATTY	3 cut(s)	177, 600, 1103
AcuI	CTGAAG	1 cut(s)	81
AcvI	CACGTG	1 cut(s)	17
AfaI	GTAC	3 cut(s)	351, 768, 1021
AfiI	CCNNNNNNNGG	2 cut(s)	116, 117
AflII	CTTAAG	2 cut(s)	662, 827
AflIII	ACRYGT	2 cut(s)	14, 16
AgsI	TTSAA	4 cut(s)	478, 653, 755, 1005
AhdI	GACNNNNNGTC	1 cut(s)	721
AjnI	CCWGG	2 cut(s)	849, 1066
AluBI	AGCT	6 cut(s)	194, 214, 272, 596, 706, 812
AluI	AGCT	6 cut(s)	194, 214, 272, 596, 706, 812
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	2 cut(s)	25, 97
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	518, 761, 1043
ApeKI	GCWGC	7 cut(s)	269, 587, 700, 703, 899, 902, 905
ApoI	RAATTY	3 cut(s)	177, 600, 1103
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	245, 1040
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BalI	TGGCCA	1 cut(s)	1045
BanII	GRGCYC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	696
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
BccI	CCATC	7 cut(s)	110, 224, 230, 298, 434, 889, 962
BciT130I	CCWGG	2 cut(s)	851, 1068
BciVI	GTATCC	2 cut(s)	180, 406
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	25, 97
BfaI	CTAG	2 cut(s)	378, 791
BfmI	CTRYAG	2 cut(s)	591, 906
BfrI	CTTAAG	2 cut(s)	662, 827
BfuI	GTATCC	2 cut(s)	180, 406
BisI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
BlsI	GCNGC	8 cut(s)	271, 519, 589, 702, 705, 901, 904, 907
Bme1390I	CCNGG	3 cut(s)	430, 851, 1068
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	3 cut(s)	430, 851, 1068
BmsI	GCATC	5 cut(s)	301, 415, 462, 646, 952
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	2 cut(s)	266, 933
BpuMI	CCSGG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	17
BsaBI	GATNNNNATC	2 cut(s)	168, 240
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	849, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 117
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	521, 608, 774
Bse3DI	GCAATG	1 cut(s)	1095
Bse8I	GATNNNNATC	2 cut(s)	168, 240
BseBI	CCWGG	2 cut(s)	851, 1068
BseDI	CCNNGG	2 cut(s)	849, 850
BseGI	GGATG	4 cut(s)	193, 309, 316, 943
BseJI	GATNNNNATC	2 cut(s)	168, 240
BseLI	CCNNNNNNNGG	2 cut(s)	116, 117
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	2 cut(s)	375, 721
BseNI	ACTGG	3 cut(s)	521, 608, 774
BseRI	GAGGAG	3 cut(s)	150, 171, 704
BseXI	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	3 cut(s)	520, 763, 1045
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	2 cut(s)	315, 429
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	116, 117
BsmAI	GTCTC	2 cut(s)	25, 97
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	520, 763, 1045
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	266, 696
Bsp1407I	TGTACA	1 cut(s)	349
BspACI	CCGC	2 cut(s)	39, 517
BspANI	GGCC	3 cut(s)	520, 763, 1045
BspCNI	CTCAG	2 cut(s)	376, 720
BspHI	TCATGA	2 cut(s)	258, 886
BspLI	GGNNCC	1 cut(s)	847
BspMAI	CTGCAG	1 cut(s)	910
BspTI	CTTAAG	2 cut(s)	662, 827
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	1095
BsrFI	RCCGGY	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	521, 608, 774
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	849, 850
Bst2UI	CCWGG	2 cut(s)	851, 1068
Bst4CI	ACNGT	3 cut(s)	418, 868, 1024
Bst6I	CTCTTC	1 cut(s)	100
BstAFI	CTTAAG	2 cut(s)	662, 827
BstAUI	TGTACA	1 cut(s)	349
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	73, 858
BstDEI	CTNAG	2 cut(s)	384, 707
BstF5I	GGATG	4 cut(s)	193, 309, 316, 943
BstMAI	GTCTC	2 cut(s)	25, 97
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 593, 700, 905, 911
BstNI	CCWGG	2 cut(s)	851, 1068
BstNSI	RCATGY	1 cut(s)	860
BstSCI	CCNGG	3 cut(s)	428, 849, 1066
BstSFI	CTRYAG	2 cut(s)	591, 906
BstV1I	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
BsuI	GTATCC	2 cut(s)	180, 406
BsuRI	GGCC	3 cut(s)	520, 763, 1045
BtsCI	GGATG	4 cut(s)	193, 309, 316, 943
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	1 cut(s)	617
Cac8I	GCNNGC	2 cut(s)	73, 858
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	2 cut(s)	258, 886
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	761
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	3 cut(s)	350, 767, 1020
CviAII	CATG	5 cut(s)	259, 353, 857, 880, 887
CviQI	GTAC	3 cut(s)	350, 767, 1020
DdeI	CTNAG	2 cut(s)	384, 707
DriI	GACNNNNNGTC	1 cut(s)	721
EaeI	YGGCCR	2 cut(s)	518, 1043
Eam1104I	CTCTTC	1 cut(s)	100
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	81
Eco72I	CACGTG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	2 cut(s)	849, 1066
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	5 cut(s)	262, 356, 860, 883, 890
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	5 cut(s)	258, 352, 856, 879, 886
FblI	GTMKAC	2 cut(s)	569, 1037
Fnu4HI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
FokI	GGATG	4 cut(s)	200, 316, 323, 930
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
FspBI	CTAG	2 cut(s)	378, 791
GluI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	520, 763, 1045
HapII	CCGG	2 cut(s)	315, 429
HgaI	GACGC	1 cut(s)	872
Hin1II	CATG	5 cut(s)	262, 356, 860, 883, 890
HincII	GTYRAC	1 cut(s)	1038
HindII	GTYRAC	1 cut(s)	1038
HinfI	GANTC	2 cut(s)	745, 995
HpaII	CCGG	2 cut(s)	315, 429
HphI	GGTGA	2 cut(s)	245, 1040
Hpy166II	GTNNAC	2 cut(s)	570, 1038
Hpy188I	TCNGA	1 cut(s)	710
Hpy188III	TCNNGA	8 cut(s)	173, 201, 245, 259, 653, 887, 950, 1091
Hpy8I	GTNNAC	2 cut(s)	570, 1038
HpyAV	CCTTC	2 cut(s)	472, 545
HpyCH4III	ACNGT	3 cut(s)	418, 868, 1024
HpyCH4IV	ACGT	2 cut(s)	16, 326
HpyCH4V	TGCA	6 cut(s)	473, 622, 700, 908, 978, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 593, 700, 905, 911
HpyF3I	CTNAG	2 cut(s)	384, 707
HpySE526I	ACGT	2 cut(s)	16, 326
Hsp92II	CATG	5 cut(s)	262, 356, 860, 883, 890
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	7 cut(s)	281, 574, 712, 715, 886, 889, 892
LweI	GCATC	5 cut(s)	301, 415, 462, 646, 952
MaeI	CTAG	2 cut(s)	378, 791
MaeII	ACGT	2 cut(s)	16, 326
MaeIII	GTNAC	4 cut(s)	643, 682, 832, 983
MboII	GAAGA	3 cut(s)	87, 152, 560
MhlI	GDGCHC	2 cut(s)	266, 696
MlsI	TGGCCA	1 cut(s)	1045
MluCI	AATT	5 cut(s)	177, 500, 600, 648, 1103
MluNI	TGGCCA	1 cut(s)	1045
MmeI	TCCRAC	1 cut(s)	112
Mox20I	TGGCCA	1 cut(s)	1045
MroXI	GAANNNNTTC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	1045
MseI	TTAA	4 cut(s)	663, 801, 828, 1113
MslI	CAYNNNNRTG	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	1045
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	2 cut(s)	662, 827
MspI	CCGG	2 cut(s)	315, 429
MspR9I	CCNGG	3 cut(s)	430, 851, 1068
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	851, 1068
MwoI	GCNNNNNNNGC	5 cut(s)	278, 593, 700, 905, 911
NciI	CCSGG	1 cut(s)	430
NlaIII	CATG	5 cut(s)	262, 356, 860, 883, 890
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	2 cut(s)	643, 983
NspI	RCATGY	1 cut(s)	860
PaeI	GCATGC	1 cut(s)	860
PagI	TCATGA	2 cut(s)	258, 886
PasI	CCCWGGG	1 cut(s)	850
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	745, 995
PfoI	TCCNGGA	1 cut(s)	1066
PkrI	GCNGC	8 cut(s)	271, 519, 589, 702, 705, 901, 904, 907
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	849, 1066
PspCI	CACGTG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	2 cut(s)	849, 1066
PspN4I	GGNNCC	1 cut(s)	847
PspPI	GGNCC	1 cut(s)	761
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	3 cut(s)	351, 768, 1021
RsaNI	GTAC	3 cut(s)	350, 767, 1020
RseI	CAYNNNNRTG	1 cut(s)	461
SalI	GTCGAC	1 cut(s)	1036
SaqAI	TTAA	4 cut(s)	663, 801, 828, 1113
SatI	GCNGC	8 cut(s)	270, 518, 588, 701, 704, 900, 903, 906
Sau96I	GGNCC	1 cut(s)	761
ScrFI	CCNGG	3 cut(s)	430, 851, 1068
SduI	GDGCHC	2 cut(s)	266, 696
SfaNI	GCATC	5 cut(s)	301, 415, 462, 646, 952
SfcI	CTRYAG	2 cut(s)	591, 906
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	4 cut(s)	245, 662, 827, 948
SmoI	CTYRAG	4 cut(s)	245, 662, 827, 948
SphI	GCATGC	1 cut(s)	860
Sse9I	AATT	5 cut(s)	177, 500, 600, 648, 1103
SsiI	CCGC	2 cut(s)	39, 517
SspMI	CTAG	2 cut(s)	378, 791
StyD4I	CCNGG	3 cut(s)	428, 849, 1066
TaaI	ACNGT	3 cut(s)	418, 868, 1024
TaiI	ACGT	2 cut(s)	19, 329
TaqI	TCGA	2 cut(s)	358, 1037
TasI	AATT	5 cut(s)	177, 500, 600, 648, 1103
TatI	WGTACW	3 cut(s)	349, 766, 1019
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	745, 995
Tru1I	TTAA	4 cut(s)	663, 801, 828, 1113
Tru9I	TTAA	4 cut(s)	663, 801, 828, 1113
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	2 cut(s)	643, 983
TseI	GCWGC	7 cut(s)	269, 587, 700, 703, 899, 902, 905
Tsp45I	GTSAC	2 cut(s)	643, 983
TspDTI	ATGAA	5 cut(s)	197, 204, 247, 561, 565
TspGWI	ACGGA	2 cut(s)	46, 284
TspRI	CASTG	1 cut(s)	624
Vha464I	CTTAAG	2 cut(s)	662, 827
XapI	RAATTY	3 cut(s)	177, 600, 1103
XceI	RCATGY	1 cut(s)	860
XcmI	CCANNNNNNNNNTGG	3 cut(s)	58, 726, 857
XmiI	GTMKAC	2 cut(s)	569, 1037
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	2 cut(s)	378, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.