Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

15917281 .. 15918154

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG155800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCCACGCATCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATAGTCAATACAAAAGTTACTCATTAGAATCACTTTCAACTTCACTCGTTTGTACTGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGCTATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACTTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTTGAAGCTGAAGTCTGCGGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTCCCCTGAAGAACATGTATTGGCTGATGATGCTTGGGCGTCTGGTTTGGCAATCCTGGCATTCATTGAGACTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

183

Amino Acids

19.62

Weight (kDa)

4.97

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	35, 323, 448
AcoI	YGGCCR	1 cut(s)	170
AcuI	CTGAAG	2 cut(s)	335, 498
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	2 cut(s)	148, 372
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	2 cut(s)	132, 310
AjnI	CCWGG	2 cut(s)	193, 525
AluBI	AGCT	3 cut(s)	301, 313, 547
AluI	AGCT	3 cut(s)	301, 313, 547
Alw21I	GWGCWC	2 cut(s)	254, 549
Alw26I	GTCTC	2 cut(s)	420, 533
Alw44I	GTGCAC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	250
ApeKI	GCWGC	3 cut(s)	26, 29, 32
AseI	ATTAAT	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	172
BanII	GRGCYC	2 cut(s)	339, 549
Bbv12I	GWGCWC	2 cut(s)	254, 549
BbvI	GCAGC	3 cut(s)	13, 16, 19
BciT130I	CCWGG	2 cut(s)	195, 527
BcoDI	GTCTC	2 cut(s)	420, 533
BfaI	CTAG	1 cut(s)	550
BisI	GCNGC	4 cut(s)	27, 30, 33, 324
BlsI	GCNGC	4 cut(s)	28, 31, 34, 325
Bme1390I	CCNGG	2 cut(s)	195, 527
BmrFI	CCNGG	2 cut(s)	195, 527
BmsI	GCATC	5 cut(s)	19, 79, 262, 391, 490
BpuEI	CTTGAG	2 cut(s)	60, 323
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	195, 527
BseGI	GGATG	2 cut(s)	70, 370
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	288, 534
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	13, 16, 19
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	2 cut(s)	254, 549
BslFI	GGGAC	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	420, 533
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	172
Bsp1286I	GDGCHC	3 cut(s)	254, 339, 549
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	3 cut(s)	35, 323, 448
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	2 cut(s)	289, 535
BspHI	TCATGA	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	411
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	195, 527
Bst4CI	ACNGT	2 cut(s)	151, 214
BstACI	GRCGYC	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	297, 426, 543
BstF5I	GGATG	2 cut(s)	70, 370
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	2 cut(s)	420, 533
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 38, 185, 500, 527
BstNI	CCWGG	2 cut(s)	195, 527
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	193, 525
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	13, 16, 19
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	70, 370
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	13
CseI	GACGC	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	147, 371
CviAII	CATG	5 cut(s)	14, 238, 269, 398, 485
CviQI	GTAC	2 cut(s)	147, 371
DdeI	CTNAG	3 cut(s)	297, 426, 543
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	339, 549
Eco32I	GATATC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	335, 498
EcoICRI	GAGCTC	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	193, 525
EcoRV	GATATC	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	339, 549
FaeI	CATG	5 cut(s)	17, 241, 272, 401, 488
FaiI	YATR	9 cut(s)	15, 23, 64, 239, 270, 399, 437, 464, 486
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	5 cut(s)	13, 237, 268, 397, 484
Fnu4HI	GCNGC	4 cut(s)	27, 30, 33, 324
FokI	GGATG	2 cut(s)	57, 377
FriOI	GRGCYC	2 cut(s)	339, 549
Fsp4HI	GCNGC	4 cut(s)	27, 30, 33, 324
FspBI	CTAG	1 cut(s)	550
GluI	GCNGC	4 cut(s)	27, 30, 33, 324
HaeIII	GGCC	1 cut(s)	172
HgaI	GACGC	1 cut(s)	498
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	17, 241, 272, 401, 488
HinfI	GANTC	2 cut(s)	122, 293
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	6, 252
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	14, 77, 340, 362
Hpy8I	GTNNAC	2 cut(s)	6, 252
HpyCH4III	ACNGT	2 cut(s)	151, 214
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	6 cut(s)	179, 227, 252, 275, 281, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 38, 185, 500, 527
HpyF3I	CTNAG	3 cut(s)	297, 426, 543
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	5 cut(s)	17, 241, 272, 401, 488
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	3 cut(s)	13, 16, 19
LweI	GCATC	5 cut(s)	19, 79, 262, 391, 490
MaeI	CTAG	1 cut(s)	550
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	3 cut(s)	110, 202, 467
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	491
MfeI	CAATTG	2 cut(s)	228, 255
MhlI	GDGCHC	3 cut(s)	254, 339, 549
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	2 cut(s)	228, 255
MluNI	TGGCCA	1 cut(s)	172
MnlI	CCTC	3 cut(s)	84, 449, 452
Mox20I	TGGCCA	1 cut(s)	172
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	2 cut(s)	380, 422
Msp20I	TGGCCA	1 cut(s)	172
MspA1I	CMGCKG	1 cut(s)	450
MspR9I	CCNGG	2 cut(s)	195, 527
MunI	CAATTG	2 cut(s)	228, 255
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	2 cut(s)	195, 527
MwoI	GCNNNNNNNGC	5 cut(s)	32, 38, 185, 500, 527
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	5 cut(s)	17, 241, 272, 401, 488
NmuCI	GTSAC	1 cut(s)	467
NspI	RCATGY	1 cut(s)	488
PagI	TCATGA	1 cut(s)	13
PciI	ACATGT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	122, 293
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	4 cut(s)	28, 31, 34, 325
Ppu21I	YACGTR	1 cut(s)	224
PscI	ACATGT	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	193, 525
PspGI	CCWGG	2 cut(s)	193, 525
PstNI	CAGNNNCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	148, 372
RsaNI	GTAC	2 cut(s)	147, 371
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	380, 422
SatI	GCNGC	4 cut(s)	27, 30, 33, 324
Sau3AI	GATC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	195, 527
SduI	GDGCHC	3 cut(s)	254, 339, 549
SetI	ASST	8 cut(s)	204, 226, 303, 315, 355, 376, 432, 549
SfaNI	GCATC	5 cut(s)	19, 79, 262, 391, 490
SmlI	CTYRAG	2 cut(s)	75, 338
SmoI	CTYRAG	2 cut(s)	75, 338
Sse9I	AATT	2 cut(s)	228, 255
SsiI	CCGC	3 cut(s)	35, 323, 448
SspMI	CTAG	1 cut(s)	550
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	193, 525
TaaI	ACNGT	2 cut(s)	151, 214
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	164, 454
TasI	AATT	2 cut(s)	228, 255
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	122, 293
Tru1I	TTAA	2 cut(s)	380, 422
Tru9I	TTAA	2 cut(s)	380, 422
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	3 cut(s)	26, 29, 32
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	381, 523
VneI	GTGCAC	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	380
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.