Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

65576774 .. 65582103

Gene Structure 5330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCAAAAAGCTCTGAATTGATACTTCGGGTATTGGCGAAGACCGAGTCATGTATGAAATGTAAGCTCCAAGGCCGAGCTGAACCAAACCCAGAACAGCCACAGTCCTGCTCAGACTATACATGTTCTTGGCCATCACTTCAAGGACTGTTCGGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTTCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTAAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGCCTTCGAAGCTGAAGTCAGCAGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTTTGTTATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

239

Amino Acids

26.17

Weight (kDa)

6.7

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	3 cut(s)	285, 537, 648
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	143, 170, 197, 272, 522
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	8 cut(s)	12, 67, 80, 223, 329, 577, 589, 602
AluI	AGCT	8 cut(s)	12, 67, 80, 223, 329, 577, 589, 602
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	696
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	73, 131, 278
ApeKI	GCWGC	7 cut(s)	217, 220, 416, 419, 422, 577, 599
ArsI	GACNNNNNNTTYG	4 cut(s)	32, 64, 578, 610
AseI	ATTAAT	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	7 cut(s)	229, 232, 403, 406, 409, 564, 611
BccI	CCATC	2 cut(s)	142, 479
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	696
BfaI	CTAG	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	179
BisI	GCNGC	7 cut(s)	218, 221, 417, 420, 423, 578, 600
BlsI	GCNGC	7 cut(s)	219, 222, 418, 421, 424, 579, 601
Bme1390I	CCNGG	1 cut(s)	368
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	4 cut(s)	163, 469, 538, 667
BpiI	GAAGAC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	584
BpuEI	CTTGAG	2 cut(s)	450, 599
BsaJI	CCNNGG	3 cut(s)	70, 366, 367
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	70, 366, 367
BseGI	GGATG	2 cut(s)	460, 646
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	3 cut(s)	126, 238, 564
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	7 cut(s)	229, 232, 403, 406, 409, 564, 611
BshFI	GGCC	3 cut(s)	75, 133, 280
BsiHKAI	GWGCWC	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	696
BsnI	GGCC	3 cut(s)	75, 133, 280
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	213, 615
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	3 cut(s)	75, 133, 280
BspCNI	CTCAG	3 cut(s)	125, 237, 565
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	70, 366, 367
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	4 cut(s)	105, 150, 385, 540
BstAFI	CTTAAG	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	4 cut(s)	112, 224, 573, 702
BstF5I	GGATG	2 cut(s)	460, 646
BstMAI	GTCTC	1 cut(s)	696
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 422, 428, 586
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	2 cut(s)	126, 377
BstSCI	CCNGG	1 cut(s)	366
BstV1I	GCAGC	7 cut(s)	229, 232, 403, 406, 409, 564, 611
BstV2I	GAAGAC	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	75, 133, 280
BtsCI	GGATG	2 cut(s)	460, 646
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	284, 536, 647
CviAII	CATG	7 cut(s)	51, 123, 374, 397, 404, 545, 674
CviQI	GTAC	3 cut(s)	284, 536, 647
DdeI	CTNAG	4 cut(s)	112, 224, 573, 702
DriI	GACNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	131
Eam1105I	GACNNNNNGTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	615
Eco57I	CTGAAG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	7 cut(s)	54, 126, 377, 400, 407, 548, 677
FalI	AAGNNNNNCTT	4 cut(s)	162, 194, 173, 205
FatI	CATG	7 cut(s)	50, 122, 373, 396, 403, 544, 673
Fnu4HI	GCNGC	7 cut(s)	218, 221, 417, 420, 423, 578, 600
FokI	GGATG	2 cut(s)	447, 653
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	7 cut(s)	218, 221, 417, 420, 423, 578, 600
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	7 cut(s)	218, 221, 417, 420, 423, 578, 600
HaeIII	GGCC	3 cut(s)	75, 133, 280
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	7 cut(s)	54, 126, 377, 400, 407, 548, 677
HinfI	GANTC	4 cut(s)	47, 262, 512, 569
Hpy188I	TCNGA	4 cut(s)	16, 115, 227, 574
Hpy188III	TCNNGA	5 cut(s)	170, 404, 467, 616, 638
HpyAV	CCTTC	1 cut(s)	591
HpyCH4III	ACNGT	4 cut(s)	105, 150, 385, 540
HpyCH4V	TGCA	6 cut(s)	217, 495, 544, 551, 557, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 422, 428, 586
HpyF3I	CTNAG	4 cut(s)	112, 224, 573, 702
Hsp92II	CATG	7 cut(s)	54, 126, 377, 400, 407, 548, 677
LmnI	GCTCC	3 cut(s)	72, 208, 665
Lsp1109I	GCAGC	7 cut(s)	229, 232, 403, 406, 409, 564, 611
LweI	GCATC	4 cut(s)	163, 469, 538, 667
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	4 cut(s)	160, 199, 349, 500
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	213, 615
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	2 cut(s)	17, 165
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	199, 315, 353, 474
Mox20I	TGGCCA	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	6 cut(s)	180, 258, 318, 656, 698, 718
Msp20I	TGGCCA	1 cut(s)	133
MspCI	CTTAAG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	4 cut(s)	217, 422, 428, 586
NlaIII	CATG	7 cut(s)	54, 126, 377, 400, 407, 548, 677
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	2 cut(s)	126, 377
NspV	TTCGAA	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	403
PasI	CCCWGGG	1 cut(s)	367
PciI	ACATGT	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	262, 512, 569
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	7 cut(s)	219, 222, 418, 421, 424, 579, 601
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PscI	ACATGT	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	632
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	3 cut(s)	285, 537, 648
RsaNI	GTAC	3 cut(s)	284, 536, 647
SaqAI	TTAA	6 cut(s)	180, 258, 318, 656, 698, 718
SatI	GCNGC	7 cut(s)	218, 221, 417, 420, 423, 578, 600
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	213, 615
SfaNI	GCATC	4 cut(s)	163, 469, 538, 667
SfuI	TTCGAA	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	179, 465, 614
SmoI	CTYRAG	3 cut(s)	179, 465, 614
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	17, 165
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	4 cut(s)	105, 150, 385, 540
TaqI	TCGA	1 cut(s)	584
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	2 cut(s)	17, 165
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	3 cut(s)	262, 512, 569
Tru1I	TTAA	6 cut(s)	180, 258, 318, 656, 698, 718
Tru9I	TTAA	6 cut(s)	180, 258, 318, 656, 698, 718
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	7 cut(s)	217, 220, 416, 419, 422, 577, 599
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	71, 181, 657
Tth111I	GACNNNGTC	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	656
XceI	RCATGY	2 cut(s)	126, 377
XcmI	CCANNNNNNNNNTGG	2 cut(s)	243, 374
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.