Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

23106558 .. 23110034

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30885

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGATGCTCGTTTGCAAACGTGGGTTGATTACTTAAGAAATGTACATGGTCGAGTTGAGAGTAGGAATGCTAGTGCTGAGGCTCTACTACTTGGTTCTCATTTGGATACTTTTGTTGATGCCGGGATATTTGATGGGTCTTTAGGCATCATTTCTGTGTTATCTGCATTAAAGGTTTTGAGTATCAATGGAAAATTGGGAGAACTAAAGCGGACGATTGAGGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACGATTCAAGATGCTCTTAAGAAAAACTCCATAGAAGTTACAGAGGAGCGCTTGCGGCAGCTCAGATATGACCCAAAATTAGTTGGGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAAGAATTGTTGAAGGCATAGCTGGACAGACAAGACTAAAGGTTACGATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTGTGGCTGGTGCTGCGGAAGCCATTGTATTATTAGAAAGCCTATTTTGTACTGTTGGTGAGATATCGACTTGGACAAGTGCAATTAATGTTATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCGACTGATGACATGGGATGTGAAGCTGTTGTGTATGAATTATCACTACTACAATTGTGGGGAAAGGCCACACACAGCTTGCGTGACAAAAAGACCTCAAAGGACACACATGTGTGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

275

Amino Acids

29.85

Weight (kDa)

5.68

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	15 - 98	3.6e-08	Peptidase family M28
Peptidase_M20	PF01546	43 - 201	8.8e-06	Peptidase family M20/M25/M40
M20_dimer	PF07687	167 - 239	9.9e-06	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	3 cut(s)	214, 397, 593
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	3 cut(s)	48, 453, 628
AfeI	AGCGCT	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	584
AflII	CTTAAG	2 cut(s)	37, 359
AflIII	ACRYGT	1 cut(s)	814
AgsI	TTSAA	3 cut(s)	350, 440, 488
AjnI	CCWGG	2 cut(s)	534, 673
AleI	CACNNNNGTG	2 cut(s)	815, 817
AluBI	AGCT	5 cut(s)	293, 403, 497, 731, 783
AluI	AGCT	5 cut(s)	293, 403, 497, 731, 783
Aor51HI	AGCGCT	1 cut(s)	392
AoxI	GGCC	2 cut(s)	446, 771
ApeKI	GCWGC	3 cut(s)	284, 400, 590
ApoI	RAATTY	1 cut(s)	297
AseI	ATTAAT	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	271, 412, 577
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	536, 675
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	127
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	394
BfrI	CTTAAG	2 cut(s)	37, 359
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	285, 398, 401, 591
BlsI	GCNGC	4 cut(s)	286, 399, 402, 592
Bme1390I	CCNGG	3 cut(s)	127, 536, 675
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	3 cut(s)	127, 536, 675
BmsI	GCATC	3 cut(s)	112, 159, 343
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	704
BsaJI	CCNNGG	2 cut(s)	534, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	2 cut(s)	305, 459
BseBI	CCWGG	2 cut(s)	536, 675
BseDI	CCNNGG	2 cut(s)	534, 535
BseGI	GGATG	2 cut(s)	13, 728
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	72, 418
BseNI	ACTGG	2 cut(s)	305, 459
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	271, 412, 577
BshFI	GGCC	2 cut(s)	448, 773
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	448, 773
Bsp1407I	TGTACA	1 cut(s)	46
BspACI	CCGC	3 cut(s)	214, 397, 593
BspANI	GGCC	2 cut(s)	448, 773
BspCNI	CTCAG	2 cut(s)	73, 417
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	532
BspTI	CTTAAG	2 cut(s)	37, 359
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	305, 459
BssECI	CCNNGG	2 cut(s)	534, 535
Bst2UI	CCWGG	2 cut(s)	536, 675
Bst4CI	ACNGT	3 cut(s)	553, 631, 694
BstAFI	CTTAAG	2 cut(s)	37, 359
BstAUI	TGTACA	1 cut(s)	46
BstBAI	YACGTR	1 cut(s)	704
BstC8I	GCNNGC	3 cut(s)	395, 543, 785
BstDEI	CTNAG	3 cut(s)	81, 404, 476
BstF5I	GGATG	2 cut(s)	13, 728
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 397, 590, 596
BstNI	CCWGG	2 cut(s)	536, 675
BstNSI	RCATGY	2 cut(s)	545, 818
BstSCI	CCNGG	3 cut(s)	125, 534, 673
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	271, 412, 577
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	448, 773
BtsCI	GGATG	2 cut(s)	13, 728
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	3 cut(s)	395, 543, 785
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	446
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	3 cut(s)	47, 452, 627
CviAII	CATG	6 cut(s)	50, 542, 565, 572, 718, 815
CviQI	GTAC	3 cut(s)	47, 452, 627
DdeI	CTNAG	3 cut(s)	81, 404, 476
Eco32I	GATATC	1 cut(s)	642
Eco47III	AGCGCT	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	534, 673
EcoRV	GATATC	1 cut(s)	642
FaeI	CATG	6 cut(s)	53, 545, 568, 575, 721, 818
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	6 cut(s)	49, 541, 564, 571, 717, 814
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	285, 398, 401, 591
FokI	GGATG	2 cut(s)	20, 735
Fsp4HI	GCNGC	4 cut(s)	285, 398, 401, 591
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	4 cut(s)	285, 398, 401, 591
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	448, 773
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	53, 545, 568, 575, 721, 818
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	346, 430
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	2 cut(s)	350, 572
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	242, 482
HpyCH4III	ACNGT	3 cut(s)	553, 631, 694
HpyCH4IV	ACGT	2 cut(s)	23, 703
HpyCH4V	TGCA	4 cut(s)	19, 170, 319, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 397, 590, 596
HpyF3I	CTNAG	3 cut(s)	81, 404, 476
HpySE526I	ACGT	2 cut(s)	23, 703
Hsp92II	CATG	6 cut(s)	53, 545, 568, 575, 721, 818
HspAI	GCGC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	3 cut(s)	271, 412, 577
LweI	GCATC	3 cut(s)	112, 159, 343
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	2 cut(s)	23, 703
MaeIII	GTNAC	5 cut(s)	340, 379, 517, 682, 788
MboII	GAAGA	1 cut(s)	257
MfeI	CAATTG	1 cut(s)	758
MluCI	AATT	7 cut(s)	197, 297, 419, 480, 660, 743, 758
MnlI	CCTC	6 cut(s)	76, 217, 379, 483, 521, 811
MseI	TTAA	4 cut(s)	38, 173, 360, 663
MslI	CAYNNNNRTG	3 cut(s)	158, 815, 817
MspCI	CTTAAG	2 cut(s)	37, 359
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	3 cut(s)	127, 536, 675
MunI	CAATTG	1 cut(s)	758
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	536, 675
MwoI	GCNNNNNNNGC	4 cut(s)	290, 397, 590, 596
NciI	CCSGG	1 cut(s)	127
NlaIII	CATG	6 cut(s)	53, 545, 568, 575, 721, 818
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	2 cut(s)	340, 788
NspI	RCATGY	2 cut(s)	545, 818
OliI	CACNNNNGTG	2 cut(s)	815, 817
PaeI	GCATGC	1 cut(s)	545
PagI	TCATGA	1 cut(s)	571
PasI	CCCWGGG	1 cut(s)	535
PciI	ACATGT	1 cut(s)	814
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	346, 430
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	4 cut(s)	286, 399, 402, 592
Ppu21I	YACGTR	1 cut(s)	704
PscI	ACATGT	1 cut(s)	814
PshBI	ATTAAT	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	534, 673
PspGI	CCWGG	2 cut(s)	534, 673
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	1 cut(s)	446
RsaI	GTAC	3 cut(s)	48, 453, 628
RsaNI	GTAC	3 cut(s)	47, 452, 627
RseI	CAYNNNNRTG	3 cut(s)	158, 815, 817
SaqAI	TTAA	4 cut(s)	38, 173, 360, 663
SatI	GCNGC	4 cut(s)	285, 398, 401, 591
Sau96I	GGNCC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	127, 536, 675
SfaNI	GCATC	3 cut(s)	112, 159, 343
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	3 cut(s)	158, 815, 817
SmlI	CTYRAG	2 cut(s)	37, 359
SmoI	CTYRAG	2 cut(s)	37, 359
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	7 cut(s)	197, 297, 419, 480, 660, 743, 758
SsiI	CCGC	3 cut(s)	214, 397, 593
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	3 cut(s)	125, 534, 673
TaaI	ACNGT	3 cut(s)	553, 631, 694
TaiI	ACGT	2 cut(s)	26, 706
TaqI	TCGA	2 cut(s)	55, 644
TasI	AATT	7 cut(s)	197, 297, 419, 480, 660, 743, 758
TatI	WGTACW	3 cut(s)	46, 451, 626
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	346, 430
Tru1I	TTAA	4 cut(s)	38, 173, 360, 663
Tru9I	TTAA	4 cut(s)	38, 173, 360, 663
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	2 cut(s)	340, 788
TseI	GCWGC	3 cut(s)	284, 400, 590
Tsp45I	GTSAC	2 cut(s)	340, 788
TspDTI	ATGAA	3 cut(s)	258, 262, 756
TspRI	CASTG	1 cut(s)	321
Vha464I	CTTAAG	2 cut(s)	37, 359
VspI	ATTAAT	1 cut(s)	663
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	2 cut(s)	545, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.