Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Reverse (-)

23168278 .. 23170034

Gene Structure 1757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG227100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGGATGCTGGTTTGCGAACGTGGGTTGATTACTTAAGAAATGTACATGGTCGAGTTGAGAGTAGGAATGCTAGTGCTGAGGCTCTACTACTTGGTTCTCATTTGGATACTTTTGTTGATGCCGAGATATTTGATGGGTCTTTAGGCATCATTTCTGTGTTATCTGCATTGATGGTTTTGAGTATCAGTGGAAAATTGGGAGAACTAAAGCGGACGATTGAGGTAATAGCATTTAGTGATGAAGAAGGAGTAAGGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACGATTCAAGATGCTCTTAAGAAAAACTCCATAGAAGTTACAGAGGAGCACTTGCGGCAGCTCAGATATGACCCAAAATTAGTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGGTTTTCATCTAGGAATTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACGATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGGTGTTGCGGAAGCCATTGTATTATTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTTATCAGAATCACTTTCAACTTCACTCATTTGTACTGTTGGTGAGATATCGACTTGGACAAGTGCAAGTAATGTTATTCCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

256

Amino Acids

27.65

Weight (kDa)

5.98

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	15 - 98	8e-06	Peptidase family M28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	3 cut(s)	214, 397, 605
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	3 cut(s)	48, 464, 718
AfiI	CCNNNNNNNGG	1 cut(s)	596
AflII	CTTAAG	2 cut(s)	37, 359
AgsI	TTSAA	3 cut(s)	350, 451, 702
AjnI	CCWGG	2 cut(s)	546, 763
AluBI	AGCT	3 cut(s)	293, 403, 509
AluI	AGCT	3 cut(s)	293, 403, 509
Alw21I	GWGCWC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	2 cut(s)	284, 400
ApoI	RAATTY	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	737
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
Bbv12I	GWGCWC	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	271, 412
BccI	CCATC	3 cut(s)	131, 169, 659
BciT130I	CCWGG	2 cut(s)	548, 765
BciVI	GTATCC	1 cut(s)	103
BfaI	CTAG	2 cut(s)	75, 488
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	2 cut(s)	37, 359
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	285, 398, 401
BlsI	GCNGC	3 cut(s)	286, 399, 402
Bme1390I	CCNGG	2 cut(s)	548, 765
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	2 cut(s)	548, 765
BmsI	GCATC	4 cut(s)	112, 159, 343, 649
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	546, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	305, 470
BseBI	CCWGG	2 cut(s)	548, 765
BseDI	CCNNGG	2 cut(s)	546, 547
BseGI	GGATG	2 cut(s)	13, 640
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseMII	CTCAG	2 cut(s)	72, 418
BseNI	ACTGG	2 cut(s)	305, 470
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	271, 412
BshFI	GGCC	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	46
BspACI	CCGC	3 cut(s)	214, 397, 605
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	73, 417
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	544
BspTI	CTTAAG	2 cut(s)	37, 359
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	305, 470
BssECI	CCNNGG	2 cut(s)	546, 547
Bst2UI	CCWGG	2 cut(s)	548, 765
Bst4CI	ACNGT	2 cut(s)	565, 721
BstAFI	CTTAAG	2 cut(s)	37, 359
BstAUI	TGTACA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	81, 404
BstF5I	GGATG	2 cut(s)	13, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 397, 602
BstNI	CCWGG	2 cut(s)	548, 765
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	546, 763
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	271, 412
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	13, 640
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	196, 314
Cac8I	GCNNGC	1 cut(s)	555
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	47, 463, 717
CviAII	CATG	4 cut(s)	50, 554, 577, 584
CviJI	RGCY	8 cut(s)	86, 293, 403, 459, 509, 596, 611, 630
CviKI_1	RGCY	8 cut(s)	86, 293, 403, 459, 509, 596, 611, 630
CviQI	GTAC	3 cut(s)	47, 463, 717
DdeI	CTNAG	2 cut(s)	81, 404
Eco32I	GATATC	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	546, 763
EcoRV	GATATC	1 cut(s)	732
FaeI	CATG	4 cut(s)	53, 557, 580, 587
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	4 cut(s)	49, 553, 576, 583
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	3 cut(s)	285, 398, 401
FokI	GGATG	2 cut(s)	20, 627
Fsp4HI	GCNGC	3 cut(s)	285, 398, 401
FspBI	CTAG	2 cut(s)	75, 488
GluI	GCNGC	3 cut(s)	285, 398, 401
HaeIII	GGCC	1 cut(s)	459
HgaI	GACGC	1 cut(s)	569
Hin1II	CATG	4 cut(s)	53, 557, 580, 587
HinfI	GANTC	3 cut(s)	346, 441, 692
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	407, 691
Hpy188III	TCNNGA	3 cut(s)	350, 584, 647
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	565, 721
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	170, 319, 675, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 397, 602
HpyF3I	CTNAG	2 cut(s)	81, 404
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	53, 557, 580, 587
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	2 cut(s)	271, 412
LweI	GCATC	4 cut(s)	112, 159, 343, 649
MaeI	CTAG	2 cut(s)	75, 488
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	4 cut(s)	340, 379, 529, 680
MboII	GAAGA	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	4 cut(s)	197, 297, 419, 492
MnlI	CCTC	5 cut(s)	76, 217, 379, 533, 654
MseI	TTAA	3 cut(s)	38, 360, 498
MslI	CAYNNNNRTG	1 cut(s)	158
MspCI	CTTAAG	2 cut(s)	37, 359
MspR9I	CCNGG	2 cut(s)	548, 765
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	548, 765
MwoI	GCNNNNNNNGC	3 cut(s)	290, 397, 602
NlaIII	CATG	4 cut(s)	53, 557, 580, 587
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	583
PasI	CCCWGGG	1 cut(s)	547
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	346, 441, 692
PfoI	TCCNGGA	1 cut(s)	763
PkrI	GCNGC	3 cut(s)	286, 399, 402
Psp6I	CCWGG	2 cut(s)	546, 763
PspGI	CCWGG	2 cut(s)	546, 763
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	457
RsaI	GTAC	3 cut(s)	48, 464, 718
RsaNI	GTAC	3 cut(s)	47, 463, 717
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	38, 360, 498
SatI	GCNGC	3 cut(s)	285, 398, 401
Sau96I	GGNCC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	548, 765
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	8 cut(s)	26, 228, 260, 295, 405, 511, 531, 544
SfaNI	GCATC	4 cut(s)	112, 159, 343, 649
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	3 cut(s)	37, 359, 645
SmoI	CTYRAG	3 cut(s)	37, 359, 645
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	4 cut(s)	197, 297, 419, 492
SsiI	CCGC	3 cut(s)	214, 397, 605
SspMI	CTAG	2 cut(s)	75, 488
StyD4I	CCNGG	2 cut(s)	546, 763
TaaI	ACNGT	2 cut(s)	565, 721
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	55, 734
TasI	AATT	4 cut(s)	197, 297, 419, 492
TatI	WGTACW	3 cut(s)	46, 462, 716
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	3 cut(s)	346, 441, 692
Tru1I	TTAA	3 cut(s)	38, 360, 498
Tru9I	TTAA	3 cut(s)	38, 360, 498
TscAI	CASTG	2 cut(s)	196, 321
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	284, 400
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	258, 262, 473
TspRI	CASTG	2 cut(s)	196, 321
Vha464I	CTTAAG	2 cut(s)	37, 359
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	2 cut(s)	75, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.