Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

2407906 .. 2409132

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54576

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGAAGGATGGTGTGACAATCCAAGATGCTCCTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAACTCAGTTTGGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGCATCAAAAGTTACAATGAGAGGTTCCCAGGGGCATGCTGGACCAGTTCCAATGTCCATGCGTCATGACCTTATGGCTGCTGCTGCGGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAATGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCCAGGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

152

Amino Acids

16.99

Weight (kDa)

6.96

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	424
AfaI	GTAC	2 cut(s)	141, 402
AgsI	TTSAA	3 cut(s)	53, 128, 387
AjnI	CCWGG	2 cut(s)	231, 447
AluBI	AGCT	2 cut(s)	79, 185
AluI	AGCT	2 cut(s)	79, 185
Alw21I	GWGCWC	1 cut(s)	69
AoxI	GGCC	2 cut(s)	134, 424
ApeKI	GCWGC	5 cut(s)	73, 76, 281, 284, 287
AspS9I	GGNCC	2 cut(s)	134, 245
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	5 cut(s)	85, 88, 268, 271, 274
BccI	CCATC	2 cut(s)	5, 344
BciT130I	CCWGG	2 cut(s)	233, 449
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	5 cut(s)	74, 77, 282, 285, 288
BlsI	GCNGC	5 cut(s)	75, 78, 283, 286, 289
Bme1390I	CCNGG	2 cut(s)	233, 449
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	134, 245
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	233, 449
BmsI	GCATC	3 cut(s)	19, 215, 334
BpuEI	CTTGAG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	231, 232
Bse1I	ACTGG	2 cut(s)	147, 248
BseBI	CCWGG	2 cut(s)	233, 449
BseDI	CCNNGG	2 cut(s)	231, 232
BseGI	GGATG	2 cut(s)	16, 325
BseMII	CTCAG	2 cut(s)	94, 111
BseNI	ACTGG	2 cut(s)	147, 248
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	85, 88, 268, 271, 274
BshFI	GGCC	2 cut(s)	136, 426
BsiHKAI	GWGCWC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	136, 426
Bsp1286I	GDGCHC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	136, 426
BspCNI	CTCAG	2 cut(s)	93, 110
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	147, 248
BssECI	CCNNGG	2 cut(s)	231, 232
Bst2UI	CCWGG	2 cut(s)	233, 449
Bst4CI	ACNGT	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	36, 80, 97
BstF5I	GGATG	2 cut(s)	16, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 287, 293
BstNI	CCWGG	2 cut(s)	233, 449
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	231, 447
BstV1I	GCAGC	5 cut(s)	85, 88, 268, 271, 274
BsuRI	GGCC	2 cut(s)	136, 426
BtsCI	GGATG	2 cut(s)	16, 325
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	134, 245
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	140, 401
CviAII	CATG	3 cut(s)	239, 262, 269
CviJI	RGCY	7 cut(s)	79, 136, 185, 281, 296, 315, 426
CviKI_1	RGCY	7 cut(s)	79, 136, 185, 281, 296, 315, 426
CviQI	GTAC	2 cut(s)	140, 401
DdeI	CTNAG	3 cut(s)	36, 80, 97
EaeI	YGGCCR	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	231, 447
EcoRV	GATATC	1 cut(s)	416
FaeI	CATG	3 cut(s)	242, 265, 272
FaiI	YATR	8 cut(s)	87, 111, 182, 240, 263, 270, 278, 319
FatI	CATG	3 cut(s)	238, 261, 268
Fnu4HI	GCNGC	5 cut(s)	74, 77, 282, 285, 288
FokI	GGATG	2 cut(s)	23, 312
Fsp4HI	GCNGC	5 cut(s)	74, 77, 282, 285, 288
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	5 cut(s)	74, 77, 282, 285, 288
HaeIII	GGCC	2 cut(s)	136, 426
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	242, 265, 272
HinfI	GANTC	2 cut(s)	118, 377
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	269, 332
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	73, 360, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 287, 293
HpyF3I	CTNAG	3 cut(s)	36, 80, 97
Hsp92II	CATG	3 cut(s)	242, 265, 272
LmnI	GCTCC	2 cut(s)	37, 64
LpnPI	CCDG	9 cut(s)	128, 150, 171, 218, 228, 245, 261, 434, 439
Lsp1109I	GCAGC	5 cut(s)	85, 88, 268, 271, 274
LweI	GCATC	3 cut(s)	19, 215, 334
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	4 cut(s)	16, 55, 214, 365
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	426
MluNI	TGGCCA	1 cut(s)	426
MnlI	CCTC	4 cut(s)	55, 171, 218, 339
Mox20I	TGGCCA	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	233, 449
MvaI	CCWGG	2 cut(s)	233, 449
MwoI	GCNNNNNNNGC	3 cut(s)	73, 287, 293
NlaIII	CATG	3 cut(s)	242, 265, 272
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	268
PasI	CCCWGGG	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	118, 377
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	5 cut(s)	75, 78, 283, 286, 289
Psp6I	CCWGG	2 cut(s)	231, 447
PspGI	CCWGG	2 cut(s)	231, 447
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	134, 245
RsaI	GTAC	2 cut(s)	141, 402
RsaNI	GTAC	2 cut(s)	140, 401
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	5 cut(s)	74, 77, 282, 285, 288
Sau96I	GGNCC	2 cut(s)	134, 245
ScrFI	CCNGG	2 cut(s)	233, 449
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	5 cut(s)	81, 187, 229, 276, 458
SfaNI	GCATC	3 cut(s)	19, 215, 334
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SphI	GCATGC	1 cut(s)	242
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	231, 447
TaaI	ACNGT	1 cut(s)	405
TaqI	TCGA	1 cut(s)	418
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	118, 377
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	5 cut(s)	73, 76, 281, 284, 287
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	2 cut(s)	99, 239
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.