Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000685

Physical Location & Seq

Genomic Coordinates Forward (+)

15875336 .. 15876225

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGAGGTTCCCAGGGGCCTGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCGGAAGCCATTACTTGGCCAAGTGCAAGTAATGCTATTCCAGGACAGGTAACATTCGCAGTAGATTTACGTGCAATTGATGACATGGGACGTGAAGCTGTTGTATATGAATTATCTAACCGATTGTATCAAATATGTGATAGGCATTCAGTTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTTGAAGCTGAAGTCTGCGGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAAGTCACTCCCCTGAAGAACATGTATTGGATGATGATGTTTGGCAATCCTGGCATTCATTGAGACTGAGCTCTAGATTGGAACATTTTTTCAGACATTACTGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

182

Amino Acids

20.09

Weight (kDa)

6.34

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20070 AT4G20070
fragaria_vesca	FvH4_3g12850 FvH4_3g12850 FvH4_3g12850
malus_domestica	MD10G1228200.v1.1
prunus_persica	Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1 Prupe.4G116700_v2.0.a1
pyrus_communis	pycom10g19170
rosa_chinensis	RchiOBHm_Chr1g0315031 RchiOBHm_Chr1g0315061 RchiOBHm_Chr1g0315091 RchiOBHm_Chr1g0315141 RchiOBHm_Chr1g0315151 RchiOBHm_Chr1g0315201 RchiOBHm_Chr1g0315231 RchiOBHm_Chr1g0315241 RchiOBHm_Chr1g0315311 RchiOBHm_Chr1g0315381 RchiOBHm_Chr1g0315441 RchiOBHm_Chr1g0315471 RchiOBHm_Chr1g0315531 RchiOBHm_Chr1g0315541 RchiOBHm_Chr1g0315581 RchiOBHm_Chr1g0315591 RchiOBHm_Chr1g0315611 RchiOBHm_Chr5g0020791 RchiOBHm_Chr5g0020891 RchiOBHm_Chr5g0021441 RchiOBHm_Chr5g0021511 RchiOBHm_Chr5g0021521 RchiOBHm_Chr5g0029451 RchiOBHm_Chr5g0029471
rosa_laevigata	RLG00000030744 RLG00000030748 RLG00000032563 RLG00000032611
rosa_multiflora	Rmu_sc0000576.1_g000021 Rmu_sc0002052.1_g000003 Rmu_sc0004180.1_g000017 Rmu_sc0004180.1_g000030 Rmu_sc0004180.1_g000035 Rmu_sc0023070.1_g000002 Rmu_ssc0000244.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057130 Rroxscaffold_1G00057510 Rroxscaffold_4G00331580
rosa_rugosa	Rorug01G0004300 Rorug05G0063000 Rorug05G0067300
rosa_samantha	Rh1AG015000 Rh1AG015600 Rh1BG007400 Rh1BG007800 Rh1CG013200 Rh5AG152900 Rh5BG152700 Rh5BG155800 Rh5CG164200 Rh5CG164700 Rh5CG170000 Rh5CG227100
rosa_wichuraiana	Rw1G000740 Rw1G000780 Rw1G000810 Rw1G000840 Rw1G000870 Rw1G000900 Rw5G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	84
AciI	CCGC	3 cut(s)	71, 299, 424
AcoI	YGGCCR	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	311, 474
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	3 cut(s)	12, 109, 488
AluBI	AGCT	4 cut(s)	167, 277, 289, 510
AluI	AGCT	4 cut(s)	167, 277, 289, 510
Alw21I	GWGCWC	2 cut(s)	230, 512
Alw26I	GTCTC	2 cut(s)	396, 496
Alw44I	GTGCAC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	17, 86
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	62, 65, 68
AseI	ATTAAT	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	315, 512
Bbv12I	GWGCWC	2 cut(s)	230, 512
BbvI	GCAGC	3 cut(s)	49, 52, 55
BciT130I	CCWGG	3 cut(s)	14, 111, 490
BcoDI	GTCTC	2 cut(s)	396, 496
BfaI	CTAG	1 cut(s)	513
BisI	GCNGC	4 cut(s)	63, 66, 69, 300
BlsI	GCNGC	4 cut(s)	64, 67, 70, 301
Bme1390I	CCNGG	3 cut(s)	14, 111, 490
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	10, 18
BmrFI	CCNGG	3 cut(s)	14, 111, 490
BmsI	GCATC	2 cut(s)	238, 367
BpuEI	CTTGAG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	12, 13
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	3 cut(s)	14, 111, 490
BseDI	CCNNGG	2 cut(s)	12, 13
BseGI	GGATG	2 cut(s)	346, 475
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	264, 497
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	3 cut(s)	49, 52, 55
BshFI	GGCC	2 cut(s)	19, 88
BsiHKAI	GWGCWC	2 cut(s)	230, 512
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	2 cut(s)	396, 496
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	2 cut(s)	214, 493
BsnI	GGCC	2 cut(s)	19, 88
Bsp1286I	GDGCHC	3 cut(s)	230, 315, 512
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	3 cut(s)	71, 299, 424
BspANI	GGCC	2 cut(s)	19, 88
BspCNI	CTCAG	2 cut(s)	265, 498
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	10, 18
BsrDI	GCAATG	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	12, 13
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	3 cut(s)	14, 111, 490
Bst4CI	ACNGT	2 cut(s)	31, 542
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	273, 402, 506
BstF5I	GGATG	2 cut(s)	346, 475
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	2 cut(s)	396, 496
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 74, 101, 490
BstNI	CCWGG	3 cut(s)	14, 111, 490
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	12, 109, 488
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	49, 52, 55
BsuRI	GGCC	2 cut(s)	19, 88
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	346, 475
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	17
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	6 cut(s)	43, 50, 154, 245, 374, 461
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	273, 402, 506
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	510
Eco24I	GRGCYC	2 cut(s)	315, 512
Eco53kI	GAGCTC	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	311, 474
EcoICRI	GAGCTC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRII	CCWGG	3 cut(s)	12, 109, 488
EcoT38I	GRGCYC	2 cut(s)	315, 512
FaeI	CATG	6 cut(s)	46, 53, 157, 248, 377, 464
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	6 cut(s)	42, 49, 153, 244, 373, 460
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 300
FokI	GGATG	2 cut(s)	353, 482
FriOI	GRGCYC	2 cut(s)	315, 512
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 300
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	4 cut(s)	63, 66, 69, 300
HaeIII	GGCC	2 cut(s)	19, 88
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	6 cut(s)	46, 53, 157, 248, 377, 464
HinfI	GANTC	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	274, 533
Hpy188III	TCNNGA	4 cut(s)	50, 316, 338, 513
Hpy8I	GTNNAC	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	31, 542
HpyCH4IV	ACGT	2 cut(s)	139, 160
HpyCH4V	TGCA	6 cut(s)	95, 143, 228, 251, 257, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 74, 101, 490
HpyF3I	CTNAG	3 cut(s)	273, 402, 506
HpySE526I	ACGT	2 cut(s)	139, 160
Hsp92II	CATG	6 cut(s)	46, 53, 157, 248, 377, 464
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	3 cut(s)	49, 52, 55
LweI	GCATC	2 cut(s)	238, 367
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	2 cut(s)	139, 160
MaeIII	GTNAC	2 cut(s)	118, 443
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	467
MfeI	CAATTG	2 cut(s)	144, 231
MhlI	GDGCHC	3 cut(s)	230, 315, 512
MlsI	TGGCCA	1 cut(s)	88
MluCI	AATT	3 cut(s)	144, 179, 231
MluNI	TGGCCA	1 cut(s)	88
MnlI	CCTC	2 cut(s)	425, 428
Mox20I	TGGCCA	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	88
MseI	TTAA	2 cut(s)	356, 398
Msp20I	TGGCCA	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	426
MspR9I	CCNGG	3 cut(s)	14, 111, 490
MunI	CAATTG	2 cut(s)	144, 231
Mva1269I	GAATGC	2 cut(s)	214, 493
MvaI	CCWGG	3 cut(s)	14, 111, 490
MwoI	GCNNNNNNNGC	4 cut(s)	68, 74, 101, 490
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	6 cut(s)	46, 53, 157, 248, 377, 464
NlaIV	GGNNCC	2 cut(s)	10, 18
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	464
PagI	TCATGA	1 cut(s)	49
PasI	CCCWGGG	1 cut(s)	13
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	2 cut(s)	214, 493
PfeI	GAWTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	64, 67, 70, 301
Ppu21I	YACGTR	1 cut(s)	140
PscI	ACATGT	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	512
Psp6I	CCWGG	3 cut(s)	12, 109, 488
PspGI	CCWGG	3 cut(s)	12, 109, 488
PspN4I	GGNNCC	2 cut(s)	10, 18
PspPI	GGNCC	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	512
SaqAI	TTAA	2 cut(s)	356, 398
SatI	GCNGC	4 cut(s)	63, 66, 69, 300
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	3 cut(s)	14, 111, 490
SduI	GDGCHC	3 cut(s)	230, 315, 512
SfaNI	GCATC	2 cut(s)	238, 367
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	144, 179, 231
SsiI	CCGC	3 cut(s)	71, 299, 424
SspMI	CTAG	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	3 cut(s)	12, 109, 488
TaaI	ACNGT	2 cut(s)	31, 542
TaiI	ACGT	2 cut(s)	142, 163
TaqI	TCGA	1 cut(s)	430
TasI	AATT	3 cut(s)	144, 179, 231
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	356, 398
Tru9I	TTAA	2 cut(s)	356, 398
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	62, 65, 68
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	192, 357, 486
Van91I	CCANNNNNTGG	1 cut(s)	84
VneI	GTGCAC	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	512
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.