FvH4_3g36030

Metallothionein-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
30926917 .. 30927355
439 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36030.t1

Sequence Viewer

Length: 222 bp
ATGTCTTCAGGCTGTAACTGTGGCTCTGACTGCAAGTGCGGCTCAGACTGCAAATGCGGCAGCATGTACCCTGACTTGGAGAACACCACAACTGAGACCATAATTGCTGGAGTTGCACCAGTCAAGACCGGCTACTATGAAGGAGGGTCTGAGAATGGAGCAGAGAATGGCTGCAAGTGCGGCAGCAACTGCAGCTGCGACTCATGCGGCTGCGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

7.3

Weight (kDa)

4.4

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_2 PF01439 3 - 71 1.1e-16 Metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 39, 57, 180, 207, 213
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 76
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 189
ApeKI GCWGC 6 cut(s) 60, 171, 183, 192, 195, 210
BbvI GCAGC 6 cut(s) 72, 158, 182, 195, 197, 204
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 3 cut(s) 57, 84, 141
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 6 cut(s) 72, 158, 182, 195, 197, 204
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 89
BspACI CCGC 5 cut(s) 39, 57, 180, 207, 213
BspCNI CTCAG 3 cut(s) 56, 85, 142
BspMAI CTGCAG 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 43, 93, 150
BstMAI GTCTC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 190
BstV1I GCAGC 6 cut(s) 72, 158, 182, 195, 197, 204
CaiI CAGNNNCTG 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 128
Csp6I GTAC 1 cut(s) 67
CviAII CATG 2 cut(s) 64, 204
CviJI RGCY 7 cut(s) 12, 24, 42, 132, 171, 195, 210
CviKI_1 RGCY 7 cut(s) 12, 24, 42, 132, 171, 195, 210
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 43, 93, 150
Eco31I GGTCTC 1 cut(s) 89
FaeI CATG 2 cut(s) 67, 207
FaiI YATR 4 cut(s) 65, 101, 138, 205
FatI CATG 2 cut(s) 63, 203
GsuI CTGGAG 1 cut(s) 129
HapII CCGG 1 cut(s) 129
Hin1II CATG 2 cut(s) 67, 207
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 129
Hpy188I TCNGA 3 cut(s) 28, 46, 151
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 5 cut(s) 33, 51, 116, 174, 192
HpyF3I CTNAG 3 cut(s) 43, 93, 150
Hsp92II CATG 2 cut(s) 67, 207
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 4 cut(s) 84, 93, 132, 142
Lsp1109I GCAGC 6 cut(s) 72, 158, 182, 195, 197, 204
MaeIII GTNAC 1 cut(s) 14
MluCI AATT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 129
NlaIII CATG 2 cut(s) 67, 207
NspI RCATGY 1 cut(s) 67
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SchI GAGTC 1 cut(s) 194
SetI ASST 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 190
Sse9I AATT 1 cut(s) 102
SsiI CCGC 5 cut(s) 39, 57, 180, 207, 213
TaaI ACNGT 1 cut(s) 20
TasI AATT 1 cut(s) 102
TauI GCSGC 5 cut(s) 42, 60, 183, 210, 216
TseI GCWGC 6 cut(s) 60, 171, 183, 192, 195, 210
TspDTI ATGAA 1 cut(s) 153
XceI RCATGY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.