Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002354.1

Orthogroup ID

OG0000858

Physical Location & Seq

Genomic Coordinates Reverse (-)

64618 .. 65124

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002354.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggagttgggatctatgagcagagagccctatggcttgcacacgcacctgaatcgaaccaaagacttcgccggcagccgtttcaggatgtcgatgatgatatccggaatctccagattcaggttctgggttgttattgtttcatcttcttctcttgcatcaaacttgttttggtttatcactcgattcgggttttgggtttggttcagggtcgatacatctccatcttcttcttcttgcagaggcgtcagcttctggtttttttttttctttctcggcggtggttgcggaggctgcggcaactatccgaacatcacagagcagagctctgcctctgagactcttgtcatgggtgtcgtgggaacacagaaactgaactatggacggcctgaggctggtgtggctatcgagggaggctccgatggctgcaagtgtgtcaactgcacctacaaccttgcaattgcaagtgagcgaggtcttgaagctttaatggagtctggtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

168

Amino Acids

18.45

Weight (kDa)

8.27

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09390 AT3G09390 AT5G02380
fragaria_vesca	FvH4_3g36020 FvH4_3g36030 FvH4_3g36040 FvH4_6g13710
malus_domestica	MD01G1035800.v1.1 MD03G1093800.v1.1 MD03G1093900.v1.1 MD03G1094500.v1.1 MD04G1128900.v1.1 MD06G1098000.v1.1 MD11G1109100.v1.1 MD11G1109200.v1.1 MD11G1109300.v1.1 MD11G1109400.v1.1 MD12G1141500.v1.1 MD16G1208900.v1.1
prunus_persica	Prupe.6G077800_v2.0.a1 Prupe.6G077900_v2.0.a1 Prupe.6G255100_v2.0.a1
pyrus_communis	pycom03g07550 pycom03g07560 pycom03g07610 pycom03g07620 pycom03g07690 pycom04g11710 pycom11g09020 pycom11g09030 pycom11g09040
rosa_chinensis	RchiOBHm_Chr2g0144901 RchiOBHm_Chr3g0466581 RchiOBHm_Chr5g0064451 RchiOBHm_Chr5g0064481 RchiOBHm_Chr5g0064491
rosa_laevigata	RLG00000004089
rosa_multiflora	Rmu_sc0001125.1_g000004 Rmu_sc0002354.1_g000013 Rmu_sc0005137.1_g000017 Rmu_sc0006937.1_g000003 Rmu_sc0020778.1_g000003 Rmu_sc0040279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016530 Rroxscaffold_1G00016540 Rroxscaffold_1G00016550 Rroxscaffold_6G00414330
rosa_rugosa	Rorug03G0082900 Rorug05G0365100 Rorug05G0365200 Rorug05G0365400 Rorug07G0140500
rosa_samantha	Rh3AG129800 Rh3BG151200 Rh3CG150900 Rh3DG151800 Rh3DG332100 Rh5AG423400 Rh5AG423500 Rh5BG438900 Rh5CG461600 Rh5DG452200 Rh6CG480300 Rh6DG500700
rosa_wichuraiana	Rw3G012270 Rw5G039800 Rw5G039810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	104
AciI	CCGC	3 cut(s)	279, 288, 297
AclWI	GGATC	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	120, 395
AgsI	TTSAA	1 cut(s)	482
AluBI	AGCT	3 cut(s)	252, 327, 485
AluI	AGCT	3 cut(s)	252, 327, 485
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	19
AlwNI	CAGNNNCTG	3 cut(s)	126, 255, 373
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	75, 294, 426
AxyI	CCTNAGG	1 cut(s)	390
BanII	GRGCYC	2 cut(s)	30, 329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	87, 281, 413
BccI	CCATC	2 cut(s)	232, 416
BceAI	ACGGC	2 cut(s)	63, 401
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcoDI	GTCTC	1 cut(s)	332
BisI	GCNGC	4 cut(s)	76, 295, 298, 427
BlsI	GCNGC	4 cut(s)	77, 296, 299, 428
BmiI	GGNNCC	1 cut(s)	418
BmsI	GCATC	1 cut(s)	167
BoxI	GACNNNNGTC	1 cut(s)	344
BplI	GAGNNNNNCTC	4 cut(s)	311, 343, 401, 433
BpmI	CTGGAG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 395
Bse118I	RCCGGY	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	104
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	120, 395
BseMII	CTCAG	2 cut(s)	327, 381
BseXI	GCAGC	3 cut(s)	87, 281, 413
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	72, 105
BslI	CCNNNNNNNGG	2 cut(s)	120, 395
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	388
Bsp1286I	GDGCHC	2 cut(s)	30, 329
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	3 cut(s)	279, 288, 297
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	328, 382
BspEI	TCCGGA	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	11
BssNI	GRCGYC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	38, 73
BstDEI	CTNAG	2 cut(s)	336, 390
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 294, 401, 423
BstPAI	GACNNNNGTC	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	87, 281, 413
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	38, 73
CaiI	CAGNNNCTG	3 cut(s)	126, 255, 373
Cfr10I	RCCGGY	1 cut(s)	71
CseI	GACGC	1 cut(s)	235
CviAII	CATG	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	336, 390
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	2 cut(s)	30, 329
Eco32I	GATATC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	30, 329
FaeI	CATG	1 cut(s)	352
FaiI	YATR	4 cut(s)	17, 33, 350, 381
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	76, 295, 298, 427
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	2 cut(s)	30, 329
Fsp4HI	GCNGC	4 cut(s)	76, 295, 298, 427
GluI	GCNGC	4 cut(s)	76, 295, 298, 427
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	2 cut(s)	72, 105
HgaI	GACGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	6 cut(s)	52, 108, 117, 186, 340, 494
HpaII	CCGG	2 cut(s)	72, 105
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	3 cut(s)	309, 337, 421
Hpy188III	TCNNGA	4 cut(s)	85, 105, 114, 479
Hpy8I	GTNNAC	1 cut(s)	439
HpyCH4V	TGCA	7 cut(s)	40, 158, 240, 429, 444, 458, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 294, 401, 423
HpyF3I	CTNAG	2 cut(s)	336, 390
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	352
Kpn2I	TCCGGA	1 cut(s)	104
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	3 cut(s)	87, 281, 413
LweI	GCATC	1 cut(s)	167
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	5 cut(s)	138, 141, 219, 222, 225
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	2 cut(s)	30, 329
MluCI	AATT	1 cut(s)	459
MlyI	GAGTC	2 cut(s)	334, 503
MnlI	CCTC	7 cut(s)	236, 284, 343, 385, 403, 407, 467
MroI	TCCGGA	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	1 cut(s)	488
MspI	CCGG	2 cut(s)	72, 105
MunI	CAATTG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	285, 294, 401, 423
NaeI	GCCGGC	1 cut(s)	73
NdeII	GATC	1 cut(s)	11
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	418
NmeAIII	GCCGAG	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	52, 108, 117, 186
PkrI	GCNGC	4 cut(s)	77, 296, 299, 428
PleI	GAGTC	2 cut(s)	334, 502
PpsI	GAGTC	2 cut(s)	334, 502
PshAI	GACNNNNGTC	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	418
PstNI	CAGNNNCTG	3 cut(s)	126, 255, 373
PsuI	RGATCY	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	4 cut(s)	76, 295, 298, 427
Sau3AI	GATC	1 cut(s)	11
SchI	GAGTC	2 cut(s)	334, 503
SduI	GDGCHC	2 cut(s)	30, 329
SetI	ASST	8 cut(s)	51, 125, 254, 329, 449, 456, 478, 487
SfaNI	GCATC	1 cut(s)	167
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	3 cut(s)	279, 288, 297
SstI	GAGCTC	1 cut(s)	329
TaqI	TCGA	5 cut(s)	55, 92, 184, 213, 408
TasI	AATT	1 cut(s)	459
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	4 cut(s)	52, 108, 117, 186
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TseI	GCWGC	3 cut(s)	75, 294, 426
TspDTI	ATGAA	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.