Rw5G039810

metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000858
Physical Location & Seq
Forward (+)
70380820 .. 70381923
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039810.1

Sequence Viewer

Length: 231 bp
ATGCCTTGCGGAAACCCAAACTGCTCGTGCTCCAACTGCTCCTGCGGCGACGACTGCAACTGCGGAAGGACTGGCTTGAGTTTCTCAGAGAACGCCACCACCTCTAAGATCATCATTGATGGGGTTGCACCGCTAAAGACGTACTATGAGGATTCAGAAATGAATTTTGGAGAGGTATACGTCCAGCGCAAGTTTGGCTCAAACTGTGATTCATTCGGCTTTCACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

76

Amino Acids

8.25

Weight (kDa)

4.79

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_2 PF01439 2 - 70 3.7e-08 Metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AciI CCGC 4 cut(s) 9, 45, 63, 131
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
Alw21I GWGCWC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 189
BauI CACGAG 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 113
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 4 cut(s) 9, 45, 63, 131
BspCNI CTCAG 1 cut(s) 98
BsrI ACTGG 1 cut(s) 76
BssMI GATC 1 cut(s) 108
BssNAI GTATAC 1 cut(s) 178
BssSI CACGAG 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 85, 105
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 36, 45, 54, 195
BstZ17I GTATAC 1 cut(s) 178
CfoI GCGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 3 cut(s) 75, 198, 219
CviKI_1 RGCY 3 cut(s) 75, 198, 219
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 85, 105
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
FaiI YATR 2 cut(s) 147, 178
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
GlaI GCGC 1 cut(s) 188
GluI GCNGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 189
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 2 cut(s) 152, 209
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 88, 157
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 140, 180
HpyCH4V TGCA 2 cut(s) 57, 128
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 45, 54, 195
HpyF3I CTNAG 2 cut(s) 85, 105
HpySE526I ACGT 2 cut(s) 140, 180
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 35, 44
LpnPI CCDG 3 cut(s) 55, 57, 197
MaeII ACGT 2 cut(s) 140, 180
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 112, 142, 166
MwoI GCNNNNNNNGC 4 cut(s) 36, 45, 54, 195
NdeII GATC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 152, 209
PkrI GCNGC 1 cut(s) 47
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 108
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 104, 143, 177, 183
SgeI CNNG 8 cut(s) 18, 37, 39, 54, 84, 88, 196, 202
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 163
SsiI CCGC 4 cut(s) 9, 45, 63, 131
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 2 cut(s) 143, 183
TasI AATT 1 cut(s) 163
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 152, 209
TspDTI ATGAA 2 cut(s) 176, 201
XapI RAATTY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.