Rh6DG500700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000858
Physical Location & Seq
Reverse (-)
65693374 .. 65693879
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG500700.1

Sequence Viewer

Length: 270 bp
ATGAGATTTGATGAAGTTAGGGTCTGTGAGCAGAGAGCCCCATGGCTTGCACACGCACCTGAATTGAACAAGAGACTTCGCCGGCAGCCGTTTCAGGATGTCGATGTTGATATCCGGAATCTCCAGATTCAGAAACTGAACTATGGACGGCACGAGGCTGGTGTGGCTACCGAGGGAGGCTCCGGTGGCTGTAAATCTGTCAACTGCATCTGCAACCTTGCAATTGCAAGTGAGCGAGGTCCTGAAGCTTTAATGGAGTCTGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.88

Weight (kDa)

6.71

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 264
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 67
AlwNI CAGNNNCTG 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 40
BauI CACGAG 1 cut(s) 152
BbvI GCAGC 1 cut(s) 97
BceAI ACGGC 2 cut(s) 73, 164
BcoDI GTCTC 1 cut(s) 67
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 181
BmsI GCATC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 41, 171
BsaWI WCCGGW 2 cut(s) 114, 182
Bse118I RCCGGY 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 41, 171
BseGI GGATG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 97
BsiSI CCGG 3 cut(s) 82, 115, 183
BsmAI GTCTC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 41
BspEI TCCGGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 41, 171
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 48, 83
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 164, 186
BstV1I GCAGC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 48, 83
CaiI CAGNNNCTG 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 239
CviAII CATG 1 cut(s) 42
CviJI RGCY 8 cut(s) 38, 46, 88, 158, 167, 180, 189, 248
CviKI_1 RGCY 8 cut(s) 38, 46, 88, 158, 167, 180, 189, 248
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 40
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 239
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 45
FaiI YATR 2 cut(s) 43, 144
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 107
HapII CCGG 3 cut(s) 82, 115, 183
Hin1II CATG 1 cut(s) 45
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 3 cut(s) 118, 127, 257
HpaII CCGG 3 cut(s) 82, 115, 183
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 4 cut(s) 95, 115, 124, 242
Hpy8I GTNNAC 1 cut(s) 202
HpyCH4V TGCA 5 cut(s) 50, 207, 213, 221, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 186
Hsp92II CATG 1 cut(s) 45
Kpn2I TCCGGA 1 cut(s) 114
KroI GCCGGC 1 cut(s) 81
KroNI GCCGGC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 9 cut(s) 72, 80, 95, 128, 137, 144, 196, 246, 255
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 216
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 62, 222
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 4 cut(s) 148, 166, 170, 230
MroI TCCGGA 1 cut(s) 114
MroNI GCCGGC 1 cut(s) 81
MseI TTAA 1 cut(s) 251
MspI CCGG 3 cut(s) 82, 115, 183
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 164, 186
NaeI GCCGGC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 41
NgoMIV GCCGGC 1 cut(s) 81
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 118, 127
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 239
PspPPI RGGWCCY 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 1 cut(s) 40
SetI ASST 4 cut(s) 61, 219, 241, 250
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 1 cut(s) 239
Sse9I AATT 2 cut(s) 62, 222
StyI CCWWGG 1 cut(s) 41
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 62, 222
TfiI GAWTC 2 cut(s) 118, 127
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.