Rh5AG423400

Metallothionein-like protein type 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000858
Physical Location & Seq
Forward (+)
73040425 .. 73058945
18521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG423400.1

Sequence Viewer

Length: 237 bp
ATGTCTTCAGGCTGCAAGTGTGGCTCAAACTGCAGCTGCGGCTCGGACTGCAAATGTGGCAGCATGTACCCTGACTTGGAGAACACCACAACTGAGACCATAATTGCTGGAGTTGCACCAGTCAAGACCTTGGGTGAGAAGCACGCTCTTCCTTCTGCTCAACACCCTCCTCCTTCTTCTGGTACACGTACTTTGGTACACGTCCTTTTGCTAAGATCTAATACCCTTCTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

78

Amino Acids

8.09

Weight (kDa)

7.62

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_2 PF01439 5 - 49 1.9e-12 Metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AfaI GTAC 4 cut(s) 68, 184, 190, 198
AfiI CCNNNNNNNGG 2 cut(s) 76, 179
AflIII ACRYGT 2 cut(s) 185, 199
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 89
ApeKI GCWGC 4 cut(s) 12, 33, 36, 60
AsuHPI GGTGA 1 cut(s) 146
BbvI GCAGC 3 cut(s) 23, 45, 72
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 31
BglII AGATCT 1 cut(s) 215
BisI GCNGC 5 cut(s) 13, 34, 37, 40, 61
BlsI GCNGC 5 cut(s) 14, 35, 38, 41, 62
BmgBI CACGTC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 179
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 76, 179
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 23, 45, 72
BslI CCNNNNNNNGG 2 cut(s) 76, 179
BsmAI GTCTC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 93, 212
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 6 cut(s) 21, 30, 39, 48, 57, 113
BstNSI RCATGY 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 23, 45, 72
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtrI CACGTC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 144
Csp6I GTAC 4 cut(s) 67, 183, 189, 197
CviAII CATG 1 cut(s) 64
CviJI RGCY 4 cut(s) 12, 24, 36, 42
CviKI_1 RGCY 4 cut(s) 12, 24, 36, 42
CviQI GTAC 4 cut(s) 67, 183, 189, 197
DdeI CTNAG 2 cut(s) 93, 212
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 101
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 5 cut(s) 13, 34, 37, 40, 61
Fsp4HI GCNGC 5 cut(s) 13, 34, 37, 40, 61
GluI GCNGC 5 cut(s) 13, 34, 37, 40, 61
GsuI CTGGAG 1 cut(s) 129
Hin1II CATG 1 cut(s) 67
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 185, 199
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 2 cut(s) 185, 199
HpyAV CCTTC 3 cut(s) 162, 183, 236
HpyCH4IV ACGT 2 cut(s) 187, 201
HpyCH4V TGCA 4 cut(s) 15, 33, 51, 116
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 30, 39, 48, 57, 113
HpyF3I CTNAG 2 cut(s) 93, 212
HpySE526I ACGT 2 cut(s) 187, 201
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 1 cut(s) 215
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 84, 93, 132, 165
Lsp1109I GCAGC 3 cut(s) 23, 45, 72
MaeII ACGT 2 cut(s) 187, 201
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 140, 168
MflI RGATCY 1 cut(s) 215
MluCI AATT 1 cut(s) 102
MnlI CCTC 2 cut(s) 177, 180
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 36
MwoI GCNNNNNNNGC 6 cut(s) 21, 30, 39, 48, 57, 113
NdeII GATC 1 cut(s) 215
NlaIII CATG 1 cut(s) 67
NspI RCATGY 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 153
PkrI GCNGC 5 cut(s) 14, 35, 38, 41, 62
Ppu21I YACGTR 1 cut(s) 188
PstI CTGCAG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 36
RsaI GTAC 4 cut(s) 68, 184, 190, 198
RsaNI GTAC 4 cut(s) 67, 183, 189, 197
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 5 cut(s) 13, 34, 37, 40, 61
Sau3AI GATC 1 cut(s) 215
SetI ASST 4 cut(s) 38, 131, 190, 204
SfcI CTRYAG 1 cut(s) 31
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 39
StyI CCWWGG 1 cut(s) 129
TaiI ACGT 2 cut(s) 190, 204
TasI AATT 1 cut(s) 102
TauI GCSGC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 4 cut(s) 12, 33, 36, 60
XceI RCATGY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.