Rorug07G0140500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000858
Physical Location & Seq
Forward (+)
11073741 .. 11075058
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0140500.1

Sequence Viewer

Length: 1053 bp
ATGGAGAGCTTGAATCCACAGGGAATCGAGCCTCCAAGCTTCGACGAGTGCCACATAAACAAGAGGCAGCGGAGCATTGACCGGAGTGCCGCTATTTCCAAGTTCCGTCGAACCGGGGAATCCTCCTCCGGTCAATGGTCGGAGGAGACGGGCATGACCACCGAGATTATGATGTCCCAAGAAGAAGAGGATAAAGATGTGAGTAAAAGCTCCCCGTGCGAATCCTACGGCTCGATATCGGTGATCGGGCGGCGGAGGGTGATGAAGGACGCCGTGGCCGTCACCAAGCTCCACGAGCACCACTTCTTCGCCGTCTACGACGGCCACGGCGGCTCCTCGGTCTCCAACGCCTGCCGCGACCGCCTGCACCAGCTCCTCGCTCAGGAGGTCGAGCCCTGGATACGCGGCAGCGACAGTACCGGAGGAGTCGACTGGGAGAAGGCCCTGGCCTCCTGCTTCACCAAGATGGATAACGAGGTCGGCGCCGCCGCCGCCGAGATGGAGGGCTGTGTGAACACAGTGGGGTCCAGCGCCGTGGTGGCGATCATAGGAAAGGAGGAAATCGTGGTGGCGAACTCCGGCAACTCACGTGCTGTTCTGTGCCGCGACGGCGTTGCTATACCTCTGTCACGTGACCACAACCCCGACCGTCCGGACGAGAAGGAGAGAGTAGAGGCGGCGGGAGGGAGAGTGATAGACTGGAAAGGCTTTCGCGTGCTGGGAGTGCTGGCGACGTCGCGGTCAATCGGAGACCATTACCTGAAGCCGTACGTGATATCGGAGCCGGAGGTGACCATCAGTAAGAGGACAGGGTCGTGCGACTTTCTGGTGATAGCGAGCGACGGACTTTGGGATGTCGTATCGAATGAGTTTGCGTGTCAGGTTGTGACGAGATGTTTGGATGCACAAATTAAGTTGAAGTTTTCGGAGGGGATGAGCGGAGGTCCGGCGGCAAATGCGGCGGCCTTGCTGGCGCAACTGGCACTGGCTCGAGGGAGCAAAGATAATATCACCGTCATAGTGGTTGAGCTCAACAAGTCCATGACCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

37.79

Weight (kDa)

5.4

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 92 - 337 1.4e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 739
AatII GACGTC 1 cut(s) 737
AccB1I GGYRCC 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 939
AccI GTMKAC 2 cut(s) 315, 429
AccII CGCG 5 cut(s) 357, 405, 606, 714, 739
AccIII TCCGGA 1 cut(s) 652
AcoI YGGCCR 2 cut(s) 276, 322
AcuI CTGAAG 1 cut(s) 782
AcvI CACGTG 2 cut(s) 590, 632
AcyI GRCGYC 3 cut(s) 270, 483, 734
AfaI GTAC 2 cut(s) 418, 770
AfiI CCNNNNNNNGG 2 cut(s) 135, 382
AgsI TTSAA 2 cut(s) 13, 919
AjnI CCWGG 2 cut(s) 395, 444
AluBI AGCT 6 cut(s) 9, 39, 210, 289, 373, 1030
AluI AGCT 6 cut(s) 9, 39, 210, 289, 373, 1030
Alw21I GWGCWC 2 cut(s) 300, 1032
Alw26I GTCTC 3 cut(s) 140, 346, 744
Ama87I CYCGRG 1 cut(s) 990
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 5 cut(s) 276, 322, 441, 447, 963
ApeKI GCWGC 2 cut(s) 67, 408
ArsI GACNNNNNNTTYG 2 cut(s) 880, 912
AspLEI GCGC 3 cut(s) 485, 533, 976
AspS9I GGNCC 3 cut(s) 442, 525, 944
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 7 cut(s) 253, 271, 274, 451, 802, 841, 1003
AvaI CYCGRG 1 cut(s) 990
AvaII GGWCC 2 cut(s) 525, 944
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 2 cut(s) 396, 1032
BauI CACGAG 1 cut(s) 293
BbrPI CACGTG 2 cut(s) 590, 632
Bbv12I GWGCWC 2 cut(s) 300, 1032
BbvI GCAGC 2 cut(s) 79, 420
BccI CCATC 3 cut(s) 460, 493, 803
BceAI ACGGC 9 cut(s) 244, 257, 263, 296, 337, 343, 518, 625, 751
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 2 cut(s) 397, 446
BciVI GTATCC 1 cut(s) 393
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 140, 346, 744
BfoI RGCGCY 2 cut(s) 486, 534
BfuI GTATCC 1 cut(s) 393
BglI GCCNNNNNGGC 4 cut(s) 330, 539, 609, 971
Bme1390I CCNGG 3 cut(s) 115, 397, 446
Bme18I GGWCC 2 cut(s) 525, 944
BmeT110I CYCGRG 1 cut(s) 990
BmgT120I GGNCC 3 cut(s) 442, 525, 944
BmiI GGNNCC 4 cut(s) 334, 484, 526, 783
BmrFI CCNGG 3 cut(s) 115, 397, 446
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 892
BmuI ACTGGG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 115
BsaAI YACGTR 3 cut(s) 590, 632, 772
BsaHI GRCGYC 3 cut(s) 270, 483, 734
BsaI GGTCTC 2 cut(s) 346, 744
BsaJI CCNNGG 7 cut(s) 114, 273, 325, 336, 395, 444, 534
BsaWI WCCGGW 4 cut(s) 81, 128, 419, 652
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 675, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 382
Bse1I ACTGG 4 cut(s) 437, 704, 984, 990
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 2 cut(s) 397, 446
BseDI CCNNGG 7 cut(s) 114, 273, 325, 336, 395, 444, 534
BseGI GGATG 3 cut(s) 859, 907, 939
BseLI CCNNNNNNNGG 2 cut(s) 135, 382
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 4 cut(s) 437, 704, 984, 990
BseRI GAGGAG 5 cut(s) 115, 158, 325, 365, 438
BseXI GCAGC 2 cut(s) 79, 420
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 5 cut(s) 357, 405, 606, 714, 739
Bsh1285I CGRYCG 2 cut(s) 361, 649
BshFI GGCC 5 cut(s) 278, 324, 443, 449, 965
BshNI GGYRCC 1 cut(s) 482
BsiEI CGRYCG 2 cut(s) 361, 649
BsiHKAI GWGCWC 2 cut(s) 300, 1032
BsiHKCI CYCGRG 1 cut(s) 990
BsiSI CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
BsiWI CGTACG 1 cut(s) 768
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 135, 382
BsmAI GTCTC 3 cut(s) 140, 346, 744
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 5 cut(s) 278, 324, 443, 449, 965
Bso31I GGTCTC 2 cut(s) 346, 744
BsoBI CYCGRG 1 cut(s) 990
Bsp1286I GDGCHC 3 cut(s) 300, 396, 1032
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 2 cut(s) 243, 543
BspANI GGCC 5 cut(s) 278, 324, 443, 449, 965
BspCNI CTCAG 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 5 cut(s) 357, 405, 606, 714, 739
BspLI GGNNCC 4 cut(s) 334, 484, 526, 783
BspT107I GGYRCC 1 cut(s) 482
BspTNI GGTCTC 2 cut(s) 346, 744
BsrBI CCGCTC 1 cut(s) 939
BsrI ACTGG 4 cut(s) 437, 704, 984, 990
BssECI CCNNGG 7 cut(s) 114, 273, 325, 336, 395, 444, 534
BssMI GATC 2 cut(s) 243, 543
BssNI GRCGYC 3 cut(s) 270, 483, 734
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst2UI CCWGG 2 cut(s) 397, 446
Bst4CI ACNGT 4 cut(s) 416, 520, 650, 1015
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 3 cut(s) 270, 483, 734
BstBAI YACGTR 3 cut(s) 590, 632, 772
BstC8I GCNNGC 6 cut(s) 352, 365, 716, 729, 838, 972
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 3 cut(s) 273, 325, 534
BstEII GGTNACC 1 cut(s) 790
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 3 cut(s) 859, 907, 939
BstFNI CGCG 5 cut(s) 357, 405, 606, 714, 739
BstH2I RGCGCY 2 cut(s) 486, 534
BstHHI GCGC 3 cut(s) 485, 533, 976
BstKTI GATC 2 cut(s) 246, 546
BstMAI GTCTC 3 cut(s) 140, 346, 744
BstMBI GATC 2 cut(s) 243, 543
BstMCI CGRYCG 2 cut(s) 361, 649
BstNI CCWGG 2 cut(s) 397, 446
BstPI GGTNACC 1 cut(s) 790
BstSCI CCNGG 3 cut(s) 113, 395, 444
BstUI CGCG 5 cut(s) 357, 405, 606, 714, 739
BstV1I GCAGC 2 cut(s) 79, 420
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 5 cut(s) 278, 324, 443, 449, 965
BtgI CCRYGG 3 cut(s) 273, 325, 534
BtsCI GGATG 3 cut(s) 859, 907, 939
BtsIMutI CAGTG 2 cut(s) 525, 983
Cac8I GCNNGC 6 cut(s) 352, 365, 716, 729, 838, 972
CfoI GCGC 3 cut(s) 485, 533, 976
Cfr13I GGNCC 3 cut(s) 442, 525, 944
CseI GACGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 417, 769
CviAII CATG 2 cut(s) 154, 1042
CviQI GTAC 2 cut(s) 417, 769
DdeI CTNAG 1 cut(s) 381
DinI GGCGCC 1 cut(s) 484
DpnI GATC 2 cut(s) 245, 545
DpnII GATC 2 cut(s) 243, 543
DrdI GACNNNNNNGTC 1 cut(s) 739
DseDI GACNNNNNNGTC 1 cut(s) 739
EaeI YGGCCR 2 cut(s) 276, 322
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 1030
Eco24I GRGCYC 2 cut(s) 396, 1032
Eco31I GGTCTC 2 cut(s) 346, 744
Eco32I GATATC 2 cut(s) 237, 777
Eco47I GGWCC 2 cut(s) 525, 944
Eco53kI GAGCTC 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 782
Eco72I CACGTG 2 cut(s) 590, 632
Eco88I CYCGRG 1 cut(s) 990
Eco91I GGTNACC 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 1030
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 442
EcoO65I GGTNACC 1 cut(s) 790
EcoRII CCWGG 2 cut(s) 395, 444
EcoRV GATATC 2 cut(s) 237, 777
EcoT38I GRGCYC 2 cut(s) 396, 1032
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 157, 1045
FaiI YATR 7 cut(s) 56, 155, 170, 548, 620, 1019, 1043
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 153, 1041
FauI CCCGC 1 cut(s) 673
FblI GTMKAC 2 cut(s) 315, 429
FokI GGATG 3 cut(s) 866, 914, 946
FriOI GRGCYC 2 cut(s) 396, 1032
GlaI GCGC 3 cut(s) 484, 532, 975
GsaI CCCAGC 1 cut(s) 722
HaeII RGCGCY 2 cut(s) 486, 534
HaeIII GGCC 5 cut(s) 278, 324, 443, 449, 965
HapII CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
HgaI GACGC 1 cut(s) 278
HhaI GCGC 3 cut(s) 485, 533, 976
Hin1I GRCGYC 3 cut(s) 270, 483, 734
Hin1II CATG 2 cut(s) 157, 1045
Hin6I GCGC 3 cut(s) 483, 531, 974
HinP1I GCGC 3 cut(s) 483, 531, 974
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 5 cut(s) 13, 24, 119, 221, 426
HpaII CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
HphI GGTGA 7 cut(s) 253, 271, 274, 451, 802, 841, 1003
Hpy166II GTNNAC 3 cut(s) 316, 430, 514
Hpy188I TCNGA 4 cut(s) 142, 749, 781, 928
Hpy188III TCNNGA 2 cut(s) 383, 653
Hpy8I GTNNAC 3 cut(s) 316, 430, 514
Hpy99I CGWCG 7 cut(s) 47, 111, 323, 611, 736, 739, 845
HpyAV CCTTC 3 cut(s) 259, 433, 655
HpyCH4III ACNGT 4 cut(s) 416, 520, 650, 1015
HpyCH4IV ACGT 4 cut(s) 589, 631, 734, 771
HpyCH4V TGCA 2 cut(s) 367, 905
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 4 cut(s) 589, 631, 734, 771
Hsp92I GRCGYC 3 cut(s) 270, 483, 734
Hsp92II CATG 2 cut(s) 157, 1045
HspAI GCGC 3 cut(s) 483, 531, 974
KasI GGCGCC 1 cut(s) 482
Kpn2I TCCGGA 1 cut(s) 652
Kzo9I GATC 2 cut(s) 243, 543
LmnI GCTCC 7 cut(s) 72, 215, 294, 338, 378, 781, 996
Lsp1109I GCAGC 2 cut(s) 79, 420
LweI GCATC 1 cut(s) 892
MaeII ACGT 4 cut(s) 589, 631, 734, 771
MaeIII GTNAC 5 cut(s) 280, 627, 632, 790, 886
MalI GATC 2 cut(s) 245, 545
MbiI CCGCTC 1 cut(s) 939
MboI GATC 2 cut(s) 243, 543
MboII GAAGA 3 cut(s) 194, 197, 298
MhlI GDGCHC 3 cut(s) 300, 396, 1032
MluCI AATT 1 cut(s) 909
Mly113I GGCGCC 1 cut(s) 483
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 2 cut(s) 120, 369
MroI TCCGGA 1 cut(s) 652
MseI TTAA 1 cut(s) 912
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
MspR9I CCNGG 3 cut(s) 115, 397, 446
MvaI CCWGG 2 cut(s) 397, 446
MvnI CGCG 5 cut(s) 357, 405, 606, 714, 739
NarI GGCGCC 1 cut(s) 483
NciI CCSGG 1 cut(s) 115
NdeII GATC 2 cut(s) 243, 543
NlaIII CATG 2 cut(s) 157, 1045
NlaIV GGNNCC 4 cut(s) 334, 484, 526, 783
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 5 cut(s) 280, 627, 632, 790, 886
PaeR7I CTCGAG 1 cut(s) 990
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 315, 354
PfeI GAWTC 4 cut(s) 13, 24, 119, 221
Pfl23II CGTACG 1 cut(s) 768
PflFI GACNNNGTC 1 cut(s) 811
PleI GAGTC 1 cut(s) 434
PluTI GGCGCC 1 cut(s) 486
PmaCI CACGTG 2 cut(s) 590, 632
PmlI CACGTG 2 cut(s) 590, 632
PpsI GAGTC 1 cut(s) 434
Ppu21I YACGTR 3 cut(s) 590, 632, 772
Psp124BI GAGCTC 1 cut(s) 1032
Psp6I CCWGG 2 cut(s) 395, 444
PspCI CACGTG 2 cut(s) 590, 632
PspEI GGTNACC 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 2 cut(s) 395, 444
PspLI CGTACG 1 cut(s) 768
PspN4I GGNNCC 4 cut(s) 334, 484, 526, 783
PspPI GGNCC 3 cut(s) 442, 525, 944
PspXI VCTCGAGB 1 cut(s) 990
PsyI GACNNNGTC 1 cut(s) 811
RsaI GTAC 2 cut(s) 418, 770
RsaNI GTAC 2 cut(s) 417, 769
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 1032
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 912
Sau3AI GATC 2 cut(s) 243, 543
Sau96I GGNCC 3 cut(s) 442, 525, 944
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 115, 397, 446
SduI GDGCHC 3 cut(s) 300, 396, 1032
SfaNI GCATC 1 cut(s) 892
SfoI GGCGCC 1 cut(s) 484
Sfr274I CTCGAG 1 cut(s) 990
SinI GGWCC 2 cut(s) 525, 944
SlaI CTCGAG 1 cut(s) 990
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 990
SmoI CTYRAG 1 cut(s) 990
Sse9I AATT 1 cut(s) 909
SspDI GGCGCC 1 cut(s) 482
SstI GAGCTC 1 cut(s) 1032
StyD4I CCNGG 3 cut(s) 113, 395, 444
TaaI ACNGT 4 cut(s) 416, 520, 650, 1015
TaiI ACGT 4 cut(s) 592, 634, 737, 774
TaqI TCGA 8 cut(s) 27, 42, 109, 233, 390, 429, 863, 991
TaqII GACCGA 1 cut(s) 328
TasI AATT 1 cut(s) 909
TfiI GAWTC 4 cut(s) 13, 24, 119, 221
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 2 cut(s) 525, 990
TseFI GTSAC 5 cut(s) 280, 627, 632, 790, 886
TseI GCWGC 2 cut(s) 67, 408
Tsp45I GTSAC 5 cut(s) 280, 627, 632, 790, 886
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 2 cut(s) 95, 858
TspRI CASTG 2 cut(s) 525, 990
Tth111I GACNNNGTC 1 cut(s) 811
VpaK11BI GGWCC 2 cut(s) 525, 944
XagI CCTNNNNNAGG 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 990
XmiI GTMKAC 2 cut(s) 315, 429
ZraI GACGTC 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.