Rmu_sc0020778.1_g000003

metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020778.1
OG0000858
Physical Location & Seq
Forward (+)
12787 .. 13508
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020778.1_g000003.1.cds

Sequence Viewer

Length: 243 bp
atgtcttgctgcggaggaaagtgtggctgcggagctggctgcaagtgcggcagtggctgcggaggctgcggcaactatgctgacatcacagagcagagctctgcctctgagactcttgtgatgggtgtcgtgggaacacagaaagtgaactatggagaggctgaagccggtgcgactaccgagggaggctgcaatggctgcaagtgtgtcaactgcacctgcgacccttgcacttgcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

80

Amino Acids

7.74

Weight (kDa)

4.77

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AciI CCGC 5 cut(s) 12, 30, 48, 60, 69
AcuI CTGAAG 1 cut(s) 183
AluBI AGCT 2 cut(s) 35, 99
AluI AGCT 2 cut(s) 35, 99
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 57
ApeKI GCWGC 7 cut(s) 9, 27, 39, 57, 66, 189, 198
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 6 cut(s) 14, 26, 44, 53, 176, 185
BccI CCATC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 9 cut(s) 10, 28, 40, 49, 58, 67, 70, 190, 199
BlsI GCNGC 9 cut(s) 11, 29, 41, 50, 59, 68, 71, 191, 200
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BsaJI CCNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 6 cut(s) 14, 26, 44, 53, 176, 185
BsgI GTGCAG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 101
BspACI CCGC 5 cut(s) 12, 30, 48, 60, 69
BspCNI CTCAG 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 180
BstAPI GCANNNNNTGC 2 cut(s) 57, 198
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 104
BstV1I GCAGC 6 cut(s) 14, 26, 44, 53, 176, 185
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 167
DdeI CTNAG 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 101
FaiI YATR 2 cut(s) 78, 153
Fnu4HI GCNGC 9 cut(s) 10, 28, 40, 49, 58, 67, 70, 190, 199
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 9 cut(s) 10, 28, 40, 49, 58, 67, 70, 190, 199
GluI GCNGC 9 cut(s) 10, 28, 40, 49, 58, 67, 70, 190, 199
HapII CCGG 1 cut(s) 168
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 148, 211
Hpy188I TCNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 148, 211
HpyCH4V TGCA 6 cut(s) 42, 192, 201, 216, 231, 237
HpyF3I CTNAG 1 cut(s) 108
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 21, 181, 232
Lsp1109I GCAGC 6 cut(s) 14, 26, 44, 53, 176, 185
MhlI GDGCHC 1 cut(s) 101
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 6 cut(s) 8, 56, 115, 151, 175, 179
MspI CCGG 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 227
PkrI GCNGC 9 cut(s) 11, 29, 41, 50, 59, 68, 71, 191, 200
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 101
SatI GCNGC 9 cut(s) 10, 28, 40, 49, 58, 67, 70, 190, 199
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 101
SetI ASST 3 cut(s) 37, 101, 221
SgeI CNNG 9 cut(s) 18, 48, 55, 128, 142, 180, 193, 214, 231
SsiI CCGC 5 cut(s) 12, 30, 48, 60, 69
SstI GAGCTC 1 cut(s) 101
TauI GCSGC 2 cut(s) 51, 72
TscAI CASTG 1 cut(s) 58
TseI GCWGC 7 cut(s) 9, 27, 39, 57, 66, 189, 198
TspRI CASTG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.