Rh6CG480300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000858
Physical Location & Seq
Forward (+)
64731333 .. 64731735
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG480300.1

Sequence Viewer

Length: 252 bp
ATGTTGATATCCGGAATCTCCAGATTCAGCGGTGGTTGCGGAGGCTACGGCAACTATCCGGACATCACAGAGCAGAGCTCGGCCTCTGAGACTCTTGTCATGGGTGGAACACAGAAACTGAACTATGGATGGCATGAGGCTGGTGTGGCTATCGAGGGAGGCTCCGGTGGCTGCAAGTCTGTCAACTGCACCTGCAACCTTGCAATTGCAAGTGAGCGAGGTCCTGAAGCTTTAATGGAGTCTGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.39

Weight (kDa)

4.64

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 200
AccIII TCCGGA 2 cut(s) 11, 58
AciI CCGC 2 cut(s) 30, 39
AcuI CTGAAG 1 cut(s) 246
AluBI AGCT 2 cut(s) 78, 230
AluI AGCT 2 cut(s) 78, 230
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 118
Aor13HI TCCGGA 2 cut(s) 11, 58
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 123
BceAI ACGGC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 200
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 163
BoxI GACNNNNGTC 1 cut(s) 95
BplI GAGNNNNNCTC 4 cut(s) 62, 94, 146, 178
BpmI CTGGAG 1 cut(s) 4
BsaWI WCCGGW 3 cut(s) 11, 58, 164
BseAI TCCGGA 2 cut(s) 11, 58
BseGI GGATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 3 cut(s) 12, 59, 165
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 80
Bsp13I TCCGGA 2 cut(s) 11, 58
BspACI CCGC 2 cut(s) 30, 39
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 2 cut(s) 11, 58
BspLI GGNNCC 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 83
BstMWI GCNNNNNNNGC 3 cut(s) 36, 146, 168
BstPAI GACNNNNGTC 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 134
BveI ACCTGC 1 cut(s) 200
CaiI CAGNNNCTG 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 221
CviAII CATG 2 cut(s) 100, 134
CviJI RGCY 8 cut(s) 45, 78, 83, 140, 149, 162, 171, 230
CviKI_1 RGCY 8 cut(s) 45, 78, 83, 140, 149, 162, 171, 230
DdeI CTNAG 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 221
EcoRV GATATC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 2 cut(s) 103, 137
FaiI YATR 3 cut(s) 101, 126, 135
FatI CATG 2 cut(s) 99, 133
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 1 cut(s) 83
HapII CCGG 3 cut(s) 12, 59, 165
Hin1II CATG 2 cut(s) 103, 137
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 4 cut(s) 15, 24, 91, 239
HpaII CCGG 3 cut(s) 12, 59, 165
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 4 cut(s) 12, 21, 59, 224
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4V TGCA 5 cut(s) 174, 189, 195, 203, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 146, 168
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 2 cut(s) 103, 137
Kpn2I TCCGGA 2 cut(s) 11, 58
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 8 cut(s) 25, 34, 72, 126, 178, 205, 228, 237
Lsp1109I GCAGC 1 cut(s) 158
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 1 cut(s) 204
MlyI GAGTC 2 cut(s) 85, 248
MnlI CCTC 6 cut(s) 35, 94, 130, 148, 152, 212
MroI TCCGGA 2 cut(s) 11, 58
MseI TTAA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 3 cut(s) 12, 59, 165
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 36, 146, 168
NlaIII CATG 2 cut(s) 103, 137
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 59
PaqCI CACCTGC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 15, 24
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 2 cut(s) 85, 247
PpsI GAGTC 2 cut(s) 85, 247
PpuMI RGGWCCY 1 cut(s) 221
PshAI GACNNNNGTC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 221
PspPPI RGGWCCY 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 118
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 2 cut(s) 85, 248
SduI GDGCHC 1 cut(s) 80
SetI ASST 5 cut(s) 80, 194, 201, 223, 232
SinI GGWCC 1 cut(s) 221
Sse9I AATT 1 cut(s) 204
SsiI CCGC 2 cut(s) 30, 39
SstI GAGCTC 1 cut(s) 80
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 204
TfiI GAWTC 2 cut(s) 15, 24
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseI GCWGC 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.