Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000858

Physical Location & Seq

Genomic Coordinates Reverse (-)

12592262 .. 12593925

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG150900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTCTTGCTGCGGAGGAAAGTGTGGCTGCGGAGCTGGCTGCAAGTGCGGCAGTGGCTGCGGAGGCTGCGCCAACTATGCTGACATCACAGAGCAGAGCTCTGCCTCTGAGACTCTTGTCATGGGTGTCGTGGGAACACAGAAAGTGAACTATGGAGAGGCTGAAGCCGGTGTGGCTACCGAGGGAGGCTGCAATGGCTGCAAGTGTGTCAACTGCACCTGCGACCCTTGCACTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006873 GO:0006875 GO:0006878 GO:0008150 GO:0009987 GO:0019725 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

80

Amino Acids

7.75

Weight (kDa)

4.77

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_2	PF01439	1 - 79	2.1e-18	Metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09390 AT3G09390 AT5G02380
fragaria_vesca	FvH4_3g36020 FvH4_3g36030 FvH4_3g36040 FvH4_6g13710
malus_domestica	MD01G1035800.v1.1 MD03G1093800.v1.1 MD03G1093900.v1.1 MD03G1094500.v1.1 MD04G1128900.v1.1 MD06G1098000.v1.1 MD11G1109100.v1.1 MD11G1109200.v1.1 MD11G1109300.v1.1 MD11G1109400.v1.1 MD12G1141500.v1.1 MD16G1208900.v1.1
prunus_persica	Prupe.6G077800_v2.0.a1 Prupe.6G077900_v2.0.a1 Prupe.6G255100_v2.0.a1
pyrus_communis	pycom03g07550 pycom03g07560 pycom03g07610 pycom03g07620 pycom03g07690 pycom04g11710 pycom11g09020 pycom11g09030 pycom11g09040
rosa_chinensis	RchiOBHm_Chr2g0144901 RchiOBHm_Chr3g0466581 RchiOBHm_Chr5g0064451 RchiOBHm_Chr5g0064481 RchiOBHm_Chr5g0064491
rosa_laevigata	RLG00000004089
rosa_multiflora	Rmu_sc0001125.1_g000004 Rmu_sc0002354.1_g000013 Rmu_sc0005137.1_g000017 Rmu_sc0006937.1_g000003 Rmu_sc0020778.1_g000003 Rmu_sc0040279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016530 Rroxscaffold_1G00016540 Rroxscaffold_1G00016550 Rroxscaffold_6G00414330
rosa_rugosa	Rorug03G0082900 Rorug05G0365100 Rorug05G0365200 Rorug05G0365400 Rorug07G0140500
rosa_samantha	Rh3AG129800 Rh3BG151200 Rh3CG150900 Rh3DG151800 Rh3DG332100 Rh5AG423400 Rh5AG423500 Rh5BG438900 Rh5CG461600 Rh5DG452200 Rh6CG480300 Rh6DG500700
rosa_wichuraiana	Rw3G012270 Rw5G039800 Rw5G039810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	4 cut(s)	12, 30, 48, 60
AcuI	CTGAAG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	35, 99
AluI	AGCT	2 cut(s)	35, 99
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	57
ApeKI	GCWGC	7 cut(s)	9, 27, 39, 57, 66, 189, 198
AspLEI	GCGC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
BcoDI	GTCTC	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 190, 199
BlsI	GCNGC	8 cut(s)	11, 29, 41, 50, 59, 68, 191, 200
BoxI	GACNNNNGTC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BsaJI	CCNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
BsgI	GTGCAG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	101
BspACI	CCGC	4 cut(s)	12, 30, 48, 60
BspCNI	CTCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	180
BstAPI	GCANNNNNTGC	2 cut(s)	57, 198
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	104
BstPAI	GACNNNNGTC	1 cut(s)	116
BstV1I	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	167
CviAII	CATG	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	78, 122, 153
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 190, 199
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 190, 199
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 190, 199
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	148, 211
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	148, 211
HpyCH4V	TGCA	6 cut(s)	42, 192, 201, 216, 231, 237
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	3 cut(s)	21, 181, 232
Lsp1109I	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
MhlI	GDGCHC	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	6 cut(s)	8, 56, 115, 151, 175, 179
MspI	CCGG	1 cut(s)	168
NlaIII	CATG	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	227
PkrI	GCNGC	8 cut(s)	11, 29, 41, 50, 59, 68, 191, 200
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	101
SatI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 190, 199
SchI	GAGTC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	3 cut(s)	37, 101, 221
SsiI	CCGC	4 cut(s)	12, 30, 48, 60
SstI	GAGCTC	1 cut(s)	101
TauI	GCSGC	1 cut(s)	51
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	7 cut(s)	9, 27, 39, 57, 66, 189, 198
TspRI	CASTG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.