Rorug05G0365100

Metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000858
Physical Location & Seq
Reverse (-)
48615916 .. 48617132
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0365100.1

Sequence Viewer

Length: 654 bp
ATGGGGCTTCTGGGAATCTGGGCGGCCATTCTCAATACGCCTTGTGCATATTTCTGGGGGAGGAAATGGAATTTATTTGACCTAGTCATGGTAGCGATGTTTGTGTCGATCCATGTCCTTTGTTTATTTGCACCATTTCATTTCAACTGGTCTGCGTTTTTCCTCATGGTTGCTCTCAGTTATGCCACCGGCTTGGGAATAACTCTGTCTTACCACAGAAACCTTGCGCACAGGAGTTTCAGGCTTCCCAAGTTTCTCGACTTGACTCTGGTTTTTCGGGGAAGTCCAATTGACTGGGTGAGCACACATCGTTACCACCACCAGTATACAGATACAGAGAAAGATGCTCATAGCCCTCTTAAGGGTTTTTGGTTTAGTCACATGGGATGGATTTTGGATAGCAATAAGCGCTTCGGAAGATATGGAGGACTGAAAAATGTTGAAGATTTGAAAAGGCAGCCATTCTATAGGTTTCTTCGTCATACGTACTTTTTACACTCGTTTATTCTTGGAGGAATTCTGTATGTCCTTGGTGGGTTTCCCTTCATCGTTTGGGGAATGGGAGTGAGAATGGTAGTTGTTTTCCACAGCACTTTTCTAGTCAATTCGGCTGGCCATACGTGGGGGTATCAAGCATGCATGGAACACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

217

Amino Acids

25.35

Weight (kDa)

9.78

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 228
AccI GTMKAC 1 cut(s) 326
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 2 cut(s) 24, 613
AcsI RAATTY 2 cut(s) 70, 516
AfaI GTAC 1 cut(s) 488
AfeI AGCGCT 1 cut(s) 410
AfiI CCNNNNNNNGG 4 cut(s) 88, 361, 362, 622
AflII CTTAAG 1 cut(s) 359
AgeI ACCGGT 1 cut(s) 648
AgsI TTSAA 3 cut(s) 145, 443, 451
Alw21I GWGCWC 1 cut(s) 305
AlwI GGATC 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 410
AoxI GGCC 2 cut(s) 24, 613
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 2 cut(s) 70, 516
AsiGI ACCGGT 1 cut(s) 648
AspLEI GCGC 2 cut(s) 229, 411
AsuHPI GGTGA 1 cut(s) 310
BalI TGGCCA 1 cut(s) 615
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 469
BccI CCATC 1 cut(s) 381
BfaI CTAG 2 cut(s) 83, 599
BfmI CTRYAG 1 cut(s) 466
BfoI RGCGCY 1 cut(s) 412
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 2 cut(s) 24, 458
BlsI GCNGC 2 cut(s) 25, 459
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 304
BsaAI YACGTR 2 cut(s) 486, 621
BsaJI CCNNGG 1 cut(s) 529
BsaWI WCCGGW 1 cut(s) 648
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 361, 362, 622
Bse118I RCCGGY 2 cut(s) 188, 648
Bse1I ACTGG 3 cut(s) 152, 299, 322
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 4 cut(s) 88, 361, 362, 622
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 3 cut(s) 152, 299, 322
BseXI GCAGC 1 cut(s) 469
BshFI GGCC 2 cut(s) 26, 615
BshTI ACCGGT 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 2 cut(s) 189, 649
BslI CCNNNNNNNGG 4 cut(s) 88, 361, 362, 622
BsnI GGCC 2 cut(s) 26, 615
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 26, 615
BspCNI CTCAG 1 cut(s) 189
BspPI GGATC 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 359
BsrFI RCCGGY 2 cut(s) 188, 648
BsrI ACTGG 3 cut(s) 152, 299, 322
BssAI RCCGGY 2 cut(s) 188, 648
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 1 cut(s) 108
BssNAI GTATAC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 529
Bst1107I GTATAC 1 cut(s) 327
BstAFI CTTAAG 1 cut(s) 359
BstBAI YACGTR 2 cut(s) 486, 621
BstC8I GCNNGC 2 cut(s) 613, 637
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 2 cut(s) 229, 411
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 639
BstSFI CTRYAG 1 cut(s) 466
BstSNI TACGTA 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 469
BstXI CCANNNNNNTGG 2 cut(s) 193, 294
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 26, 615
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 392
Cac8I GCNNGC 2 cut(s) 613, 637
CfoI GCGC 2 cut(s) 229, 411
Cfr10I RCCGGY 2 cut(s) 188, 648
Csp6I GTAC 1 cut(s) 487
CspAI ACCGGT 1 cut(s) 648
CviAII CATG 6 cut(s) 88, 113, 166, 382, 636, 640
CviJI RGCY 8 cut(s) 7, 26, 192, 244, 354, 460, 611, 615
CviKI_1 RGCY 8 cut(s) 7, 26, 192, 244, 354, 460, 611, 615
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 2 cut(s) 24, 613
Eco105I TACGTA 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 529
Eco47III AGCGCT 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 641
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 6 cut(s) 91, 116, 169, 385, 639, 643
FatI CATG 6 cut(s) 87, 112, 165, 381, 635, 639
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 2 cut(s) 24, 458
FokI GGATG 1 cut(s) 399
Fsp4HI GCNGC 2 cut(s) 24, 458
FspBI CTAG 2 cut(s) 83, 599
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 2 cut(s) 228, 410
GluI GCNGC 2 cut(s) 24, 458
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 2 cut(s) 26, 615
HapII CCGG 2 cut(s) 189, 649
HhaI GCGC 2 cut(s) 229, 411
Hin1II CATG 6 cut(s) 91, 116, 169, 385, 639, 643
Hin6I GCGC 2 cut(s) 227, 409
HinP1I GCGC 2 cut(s) 227, 409
HinfI GANTC 2 cut(s) 15, 265
HpaII CCGG 2 cut(s) 189, 649
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 416
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 485, 620
HpyCH4V TGCA 3 cut(s) 47, 131, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 485, 620
Hsp92II CATG 6 cut(s) 91, 116, 169, 385, 639, 643
HspAI GCGC 2 cut(s) 227, 409
Kzo9I GATC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 83, 599
MaeII ACGT 2 cut(s) 485, 620
MaeIII GTNAC 2 cut(s) 311, 377
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 3 cut(s) 429, 455, 467
MfeI CAATTG 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 615
MluCI AATT 4 cut(s) 70, 288, 516, 604
MluNI TGGCCA 1 cut(s) 615
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 5 cut(s) 54, 173, 366, 419, 506
Mox20I TGGCCA 1 cut(s) 615
Mph1103I ATGCAT 1 cut(s) 641
MscI TGGCCA 1 cut(s) 615
MseI TTAA 1 cut(s) 360
Msp20I TGGCCA 1 cut(s) 615
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 189, 649
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 408
NdeII GATC 1 cut(s) 108
NlaIII CATG 6 cut(s) 91, 116, 169, 385, 639, 643
NmuCI GTSAC 1 cut(s) 377
NsbI TGCGCA 1 cut(s) 228
NsiI ATGCAT 1 cut(s) 641
NspI RCATGY 1 cut(s) 639
PaeI GCATGC 1 cut(s) 639
PfeI GAWTC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 83
PinAI ACCGGT 1 cut(s) 648
PkrI GCNGC 2 cut(s) 25, 459
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 2 cut(s) 486, 621
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 24, 458
Sau3AI GATC 1 cut(s) 108
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 1 cut(s) 305
SetI ASST 5 cut(s) 84, 225, 473, 488, 623
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 466
SgrAI CRCCGGYG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SnaBI TACGTA 1 cut(s) 486
SphI GCATGC 1 cut(s) 639
Sse9I AATT 4 cut(s) 70, 288, 516, 604
SsiI CCGC 1 cut(s) 23
SspMI CTAG 2 cut(s) 83, 599
StyI CCWWGG 1 cut(s) 529
TaiI ACGT 2 cut(s) 488, 623
TaqI TCGA 2 cut(s) 107, 258
TasI AATT 4 cut(s) 70, 288, 516, 604
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 128, 535
Tth111I GACNNNGTC 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 359
XapI RAATTY 2 cut(s) 70, 516
XceI RCATGY 1 cut(s) 639
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 2 cut(s) 83, 599
Zsp2I ATGCAT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.