Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000858

Physical Location & Seq

Genomic Coordinates Forward (+)

21998702 .. 22000380

Gene Structure 1679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1141500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTACTCGTTCAAAACAGAGCTTGCGTTTATCTGCTTCTTTGTCATCAATTCAATCAAACTTTCCGTCGGGAAATTTTCCGTCTCCAATTCCAAAAATGTCGTCGTGCTGCGGTGGTAAATGTGGTTGCGGGTCCGGCTGCAGCTGCGGCAGTGGCTGCAACGGGTGTGGGATGGCTCCTGATCTGAGCTACATGGAGGGGTCCACCACTGAGACCCTCGTGATGGGAGTTGCTCCCCAGAAGTCTCACATGGAGGCATCTGAGATGGGAGTTGCTGCCGAGAACGGATGCAAGTGTGGAGACAACTGCACCTGCAACCCCTGCAACTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

113

Amino Acids

11.34

Weight (kDa)

7.38

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_2	PF01439	36 - 111	3.6e-25	Metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09390 AT3G09390 AT5G02380
fragaria_vesca	FvH4_3g36020 FvH4_3g36030 FvH4_3g36040 FvH4_6g13710
malus_domestica	MD01G1035800.v1.1 MD03G1093800.v1.1 MD03G1093900.v1.1 MD03G1094500.v1.1 MD04G1128900.v1.1 MD06G1098000.v1.1 MD11G1109100.v1.1 MD11G1109200.v1.1 MD11G1109300.v1.1 MD11G1109400.v1.1 MD12G1141500.v1.1 MD16G1208900.v1.1
prunus_persica	Prupe.6G077800_v2.0.a1 Prupe.6G077900_v2.0.a1 Prupe.6G255100_v2.0.a1
pyrus_communis	pycom03g07550 pycom03g07560 pycom03g07610 pycom03g07620 pycom03g07690 pycom04g11710 pycom11g09020 pycom11g09030 pycom11g09040
rosa_chinensis	RchiOBHm_Chr2g0144901 RchiOBHm_Chr3g0466581 RchiOBHm_Chr5g0064451 RchiOBHm_Chr5g0064481 RchiOBHm_Chr5g0064491
rosa_laevigata	RLG00000004089
rosa_multiflora	Rmu_sc0001125.1_g000004 Rmu_sc0002354.1_g000013 Rmu_sc0005137.1_g000017 Rmu_sc0006937.1_g000003 Rmu_sc0020778.1_g000003 Rmu_sc0040279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016530 Rroxscaffold_1G00016540 Rroxscaffold_1G00016550 Rroxscaffold_6G00414330
rosa_rugosa	Rorug03G0082900 Rorug05G0365100 Rorug05G0365200 Rorug05G0365400 Rorug07G0140500
rosa_samantha	Rh3AG129800 Rh3BG151200 Rh3CG150900 Rh3DG151800 Rh3DG332100 Rh5AG423400 Rh5AG423500 Rh5BG438900 Rh5CG461600 Rh5DG452200 Rh6CG480300 Rh6DG500700
rosa_wichuraiana	Rw3G012270 Rw5G039800 Rw5G039810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	323
AciI	CCGC	3 cut(s)	114, 132, 150
AcsI	RAATTY	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	15, 56
AluBI	AGCT	3 cut(s)	24, 147, 192
AluI	AGCT	3 cut(s)	24, 147, 192
Alw26I	GTCTC	4 cut(s)	90, 209, 252, 297
AlwNI	CAGNNNCTG	1 cut(s)	159
ApeKI	GCWGC	6 cut(s)	111, 141, 144, 147, 159, 278
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	4 cut(s)	53, 85, 89, 121
AspS9I	GGNCC	2 cut(s)	135, 204
AvaII	GGWCC	2 cut(s)	135, 204
BauI	CACGAG	1 cut(s)	221
BbvI	GCAGC	6 cut(s)	98, 128, 134, 146, 156, 265
BccI	CCATC	3 cut(s)	169, 220, 262
BcoDI	GTCTC	4 cut(s)	90, 209, 252, 297
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	7 cut(s)	112, 142, 145, 148, 151, 160, 279
BlsI	GCNGC	7 cut(s)	113, 143, 146, 149, 152, 161, 280
Bme18I	GGWCC	2 cut(s)	135, 204
BmgT120I	GGNCC	2 cut(s)	135, 204
BmiI	GGNNCC	3 cut(s)	136, 180, 205
BmsI	GCATC	2 cut(s)	269, 281
BsaI	GGTCTC	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	180, 296
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	179, 204, 255
BseXI	GCAGC	6 cut(s)	98, 128, 134, 146, 156, 265
BsgI	GTGCAG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	4 cut(s)	90, 209, 252, 297
BsmBI	CGTCTC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	3 cut(s)	114, 132, 150
BspCNI	CTCAG	3 cut(s)	180, 205, 256
BspLI	GGNNCC	3 cut(s)	136, 180, 205
BspMAI	CTGCAG	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	209
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
BstAPI	GCANNNNNTGC	2 cut(s)	159, 324
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	188, 213, 264
BstF5I	GGATG	2 cut(s)	180, 296
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	4 cut(s)	90, 209, 252, 297
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 147, 150, 156, 159, 324
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	6 cut(s)	98, 128, 134, 146, 156, 265
BtsCI	GGATG	2 cut(s)	180, 296
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 210
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	135, 204
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	2 cut(s)	196, 253
CviJI	RGCY	6 cut(s)	24, 141, 147, 159, 179, 192
CviKI_1	RGCY	6 cut(s)	24, 141, 147, 159, 179, 192
DdeI	CTNAG	3 cut(s)	188, 213, 264
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	135, 204
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	2 cut(s)	199, 256
FaiI	YATR	2 cut(s)	197, 254
FatI	CATG	2 cut(s)	195, 252
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	7 cut(s)	112, 142, 145, 148, 151, 160, 279
FokI	GGATG	2 cut(s)	187, 303
Fsp4HI	GCNGC	7 cut(s)	112, 142, 145, 148, 151, 160, 279
GluI	GCNGC	7 cut(s)	112, 142, 145, 148, 151, 160, 279
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	199, 256
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	189, 265
Hpy188III	TCNNGA	3 cut(s)	72, 182, 223
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	2 cut(s)	73, 109
HpyCH4V	TGCA	7 cut(s)	144, 162, 294, 312, 318, 327, 333
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 147, 150, 156, 159, 324
HpyF3I	CTNAG	3 cut(s)	188, 213, 264
Hsp92II	CATG	2 cut(s)	199, 256
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	184, 241
LpnPI	CCDG	4 cut(s)	151, 195, 254, 328
Lsp1109I	GCAGC	6 cut(s)	98, 128, 134, 146, 156, 265
LweI	GCATC	2 cut(s)	269, 281
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MluCI	AATT	3 cut(s)	51, 76, 90
MnlI	CCTC	3 cut(s)	193, 230, 250
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	6 cut(s)	138, 147, 150, 156, 159, 324
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	199, 256
NlaIV	GGNNCC	3 cut(s)	136, 180, 205
NmeAIII	GCCGAG	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	323
PkrI	GCNGC	7 cut(s)	113, 143, 146, 149, 152, 161, 280
PspN4I	GGNNCC	3 cut(s)	136, 180, 205
PspPI	GGNCC	2 cut(s)	135, 204
PstI	CTGCAG	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	147
SatI	GCNGC	7 cut(s)	112, 142, 145, 148, 151, 160, 279
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	135, 204
SetI	ASST	4 cut(s)	26, 149, 194, 317
SfaNI	GCATC	2 cut(s)	269, 281
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	2 cut(s)	135, 204
Sse9I	AATT	3 cut(s)	51, 76, 90
SsiI	CCGC	3 cut(s)	114, 132, 150
TasI	AATT	3 cut(s)	51, 76, 90
TauI	GCSGC	1 cut(s)	153
TscAI	CASTG	2 cut(s)	160, 217
TseI	GCWGC	6 cut(s)	111, 141, 144, 147, 159, 278
TspGWI	ACGGA	3 cut(s)	57, 72, 303
TspRI	CASTG	2 cut(s)	160, 217
VpaK11BI	GGWCC	2 cut(s)	135, 204
XapI	RAATTY	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.