Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000858

Physical Location & Seq

Genomic Coordinates Forward (+)

36644840 .. 36645999

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCTTGCTGCGGAGGAAAGTGTGGCTGCGGAGCTGGCTGCAAGTGCGGCACTGGCTGCGGAGGCTGCGCCAACTATGCTGACATCACAGAGCAGAGCTCTGCCTCTGAGACTCTTGTCATGGGAACTATGGAGAGGCTGAAGCCGGTGTGGCTACTGAGGGAGGCTGCAATGGCTGCAAGTGTGTCAACTGCACCTGCGACCCTTGCACTTGCAAGTGAGCGAGGCCTTGAAGCTTTCATGGAGTCTGGTGCTTCAAGAAGAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006873 GO:0006875 GO:0006878 GO:0008150 GO:0009987 GO:0019725 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

90

Amino Acids

9.09

Weight (kDa)

7.49

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_2	PF01439	1 - 46	6.2e-14	Metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09390 AT3G09390 AT5G02380
fragaria_vesca	FvH4_3g36020 FvH4_3g36030 FvH4_3g36040 FvH4_6g13710
malus_domestica	MD01G1035800.v1.1 MD03G1093800.v1.1 MD03G1093900.v1.1 MD03G1094500.v1.1 MD04G1128900.v1.1 MD06G1098000.v1.1 MD11G1109100.v1.1 MD11G1109200.v1.1 MD11G1109300.v1.1 MD11G1109400.v1.1 MD12G1141500.v1.1 MD16G1208900.v1.1
prunus_persica	Prupe.6G077800_v2.0.a1 Prupe.6G077900_v2.0.a1 Prupe.6G255100_v2.0.a1
pyrus_communis	pycom03g07550 pycom03g07560 pycom03g07610 pycom03g07620 pycom03g07690 pycom04g11710 pycom11g09020 pycom11g09030 pycom11g09040
rosa_chinensis	RchiOBHm_Chr2g0144901 RchiOBHm_Chr3g0466581 RchiOBHm_Chr5g0064451 RchiOBHm_Chr5g0064481 RchiOBHm_Chr5g0064491
rosa_laevigata	RLG00000004089
rosa_multiflora	Rmu_sc0001125.1_g000004 Rmu_sc0002354.1_g000013 Rmu_sc0005137.1_g000017 Rmu_sc0006937.1_g000003 Rmu_sc0020778.1_g000003 Rmu_sc0040279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016530 Rroxscaffold_1G00016540 Rroxscaffold_1G00016550 Rroxscaffold_6G00414330
rosa_rugosa	Rorug03G0082900 Rorug05G0365100 Rorug05G0365200 Rorug05G0365400 Rorug07G0140500
rosa_samantha	Rh3AG129800 Rh3BG151200 Rh3CG150900 Rh3DG151800 Rh3DG332100 Rh5AG423400 Rh5AG423500 Rh5BG438900 Rh5CG461600 Rh5DG452200 Rh6CG480300 Rh6DG500700
rosa_wichuraiana	Rw3G012270 Rw5G039800 Rw5G039810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AciI	CCGC	4 cut(s)	12, 30, 48, 60
AcuI	CTGAAG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	233, 258
AluBI	AGCT	4 cut(s)	35, 99, 236, 269
AluI	AGCT	4 cut(s)	35, 99, 236, 269
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	7 cut(s)	9, 27, 39, 57, 66, 167, 176
AspLEI	GCGC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	6 cut(s)	14, 26, 44, 53, 154, 163
BcoDI	GTCTC	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	205
BglI	GCCNNNNNGGC	1 cut(s)	151
BisI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 168, 177
BlsI	GCNGC	8 cut(s)	11, 29, 41, 50, 59, 68, 169, 178
BoxI	GACNNNNGTC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	99, 149
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	14, 26, 44, 53, 154, 163
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	101
BspACI	CCGC	4 cut(s)	12, 30, 48, 60
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	100, 150
BspMI	ACCTGC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	145
BstAPI	GCANNNNNTGC	2 cut(s)	57, 176
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	108, 158
BstHHI	GCGC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	104
BstPAI	GACNNNNGTC	1 cut(s)	116
BstV1I	GCAGC	6 cut(s)	14, 26, 44, 53, 154, 163
BsuRI	GGCC	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	145
CviAII	CATG	2 cut(s)	121, 241
DdeI	CTNAG	2 cut(s)	108, 158
Ecl136II	GAGCTC	1 cut(s)	99
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	2 cut(s)	124, 244
FaiI	YATR	4 cut(s)	78, 122, 131, 242
FalI	AAGNNNNNCTT	1 cut(s)	253
FatI	CATG	2 cut(s)	120, 240
Fnu4HI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 168, 177
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 168, 177
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 168, 177
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	124, 244
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	2 cut(s)	234, 267
HinfI	GANTC	2 cut(s)	112, 245
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	42, 170, 179, 194, 209, 215
HpyF3I	CTNAG	2 cut(s)	108, 158
Hsp92II	CATG	2 cut(s)	124, 244
HspAI	GCGC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	5 cut(s)	21, 39, 159, 210, 234
Lsp1109I	GCAGC	6 cut(s)	14, 26, 44, 53, 154, 163
MboII	GAAGA	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	106, 254
MnlI	CCTC	7 cut(s)	8, 56, 115, 129, 153, 157, 218
MspI	CCGG	1 cut(s)	146
NlaIII	CATG	2 cut(s)	124, 244
PaqCI	CACCTGC	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	228
PkrI	GCNGC	8 cut(s)	11, 29, 41, 50, 59, 68, 169, 178
PleI	GAGTC	2 cut(s)	106, 253
PpsI	GAGTC	2 cut(s)	106, 253
PshAI	GACNNNNGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	101
SatI	GCNGC	8 cut(s)	10, 28, 40, 49, 58, 67, 168, 177
SchI	GAGTC	2 cut(s)	106, 254
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	5 cut(s)	37, 101, 199, 238, 271
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	4 cut(s)	12, 30, 48, 60
SstI	GAGCTC	1 cut(s)	101
StuI	AGGCCT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	51
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	7 cut(s)	9, 27, 39, 57, 66, 167, 176
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.