Rmu_sc0005137.1_g000017

metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005137.1
OG0000858
Physical Location & Seq
Forward (+)
55201 .. 55700
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005137.1_g000017.1.cds

Sequence Viewer

Length: 420 bp
atgaagttgggatctgtgagcagagagccccatagcttgcatacgcacctgaatcgaaccagagacttcgccggcagccgtttcaggatgtcgatattgatatccggaatctccatattcaggttctggggtcgatacatctccatcttcttcttcttcttacagaggcgtcggcttctgggttttttttttctcggcggtggttgcggaggctgtggcaactatccagacatcacagagcagagctcggcctctgagactcttgtcattggtggaacacagaaactgaactatggactgcatgaggctggtgtggctatcgagggaggctccagtggctgcaagtctgtcaactgcacttgcaaccttacaattgcaagtgagcgaggtcctgaagctttaatggagtctggtgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

139

Amino Acids

15.17

Weight (kDa)

8.72

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 104
AciI CCGC 2 cut(s) 198, 207
AclWI GGATC 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 36, 246, 398
AluI AGCT 3 cut(s) 36, 246, 398
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 2 cut(s) 57, 251
AlwI GGATC 1 cut(s) 19
AlwNI CAGNNNCTG 3 cut(s) 126, 286, 339
Aor13HI TCCGGA 1 cut(s) 104
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 75, 339
AspS9I GGNCC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 389
BanII GRGCYC 2 cut(s) 30, 248
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 87, 326
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BcoDI GTCTC 2 cut(s) 57, 251
BisI GCNGC 2 cut(s) 76, 340
BlsI GCNGC 2 cut(s) 77, 341
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 331
BoxI GACNNNNGTC 1 cut(s) 263
BplI GAGNNNNNCTC 4 cut(s) 230, 262, 314, 346
BpmI CTGGAG 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 104
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 87, 326
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 2 cut(s) 72, 105
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 57, 251
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 30, 248
Bsp13I TCCGGA 1 cut(s) 104
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 2 cut(s) 198, 207
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 38, 73
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 2 cut(s) 57, 251
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 204, 314, 336
BstPAI GACNNNNGTC 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 87, 326
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 38, 73
CaiI CAGNNNCTG 3 cut(s) 126, 286, 339
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 389
CseI GACGC 1 cut(s) 158
CviAII CATG 1 cut(s) 302
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 30, 248
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 389
EcoRV GATATC 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 30, 248
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 33, 42, 116, 294, 303
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 76, 340
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 2 cut(s) 30, 248
Fsp4HI GCNGC 2 cut(s) 76, 340
GluI GCNGC 2 cut(s) 76, 340
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 72, 105
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 1 cut(s) 305
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 4 cut(s) 52, 108, 259, 407
HpaII CCGG 2 cut(s) 72, 105
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 4 cut(s) 85, 105, 227, 392
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 174
HpyCH4V TGCA 6 cut(s) 40, 301, 342, 357, 363, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 314, 336
HpyF3I CTNAG 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 1 cut(s) 305
Kpn2I TCCGGA 1 cut(s) 104
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 2 cut(s) 87, 326
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 4 cut(s) 139, 142, 145, 148
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 2 cut(s) 30, 248
MluCI AATT 1 cut(s) 372
MlyI GAGTC 2 cut(s) 253, 416
MnlI CCTC 7 cut(s) 159, 203, 262, 298, 316, 320, 380
MroI TCCGGA 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 1 cut(s) 401
MspI CCGG 2 cut(s) 72, 105
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 204, 314, 336
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 1 cut(s) 11
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 331
NmeAIII GCCGAG 2 cut(s) 174, 227
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 52, 108
PkrI GCNGC 2 cut(s) 77, 341
PleI GAGTC 2 cut(s) 253, 415
PpsI GAGTC 2 cut(s) 253, 415
PpuMI RGGWCCY 1 cut(s) 389
PshAI GACNNNNGTC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 389
PspPPI RGGWCCY 1 cut(s) 389
PstNI CAGNNNCTG 3 cut(s) 126, 286, 339
PsuI RGATCY 1 cut(s) 11
SacI GAGCTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 2 cut(s) 76, 340
Sau3AI GATC 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 2 cut(s) 253, 416
SduI GDGCHC 2 cut(s) 30, 248
SetI ASST 7 cut(s) 38, 51, 125, 248, 369, 391, 400
SinI GGWCC 1 cut(s) 389
Sse9I AATT 1 cut(s) 372
SsiI CCGC 2 cut(s) 198, 207
SstI GAGCTC 1 cut(s) 248
TaqI TCGA 4 cut(s) 55, 92, 133, 321
TasI AATT 1 cut(s) 372
TfiI GAWTC 2 cut(s) 52, 108
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 1 cut(s) 340
TseI GCWGC 2 cut(s) 75, 339
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.