pycom03g07550

Metallothionein-like protein type 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
5987735 .. 5988566
832 bp
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UTR
Exon/CDS
Intron
pycom03g07550.1

Sequence Viewer

Length: 306 bp
ATGAAAGAAATCTCTAAAGCTTTGAGTGAATTCAATTTCCAGCACTACAACACTCTTCTCCTTATCCAACTTTTTAAAAAAATGTCTTGCAATTGTAGCTGTGGCAGTGACTGCAAGTGCGGCAGTGGCTGCAAGTGTGGCATGAACCCTGACTTGAGCTACTCAGAGACCACTTCCACTGAAACTATCATTGCCGGAGCACCTGTGAAAATGTTCTCTGAGGGGTCTGAGATGAGCTATGGAGCAGAGAATGACTGCAAGTGTGGCTCAAGCTGCAGCTGCAGCTCATGTGGCTGCCACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

10.81

Weight (kDa)

6.05

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_2 PF01439 30 - 99 2.7e-15 Metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AcsI RAATTY 1 cut(s) 29
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 7 cut(s) 20, 99, 159, 237, 273, 279, 285
AluI AGCT 7 cut(s) 20, 99, 159, 237, 273, 279, 285
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 2 cut(s) 111, 129
ApeKI GCWGC 6 cut(s) 129, 273, 276, 279, 282, 294
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 6 cut(s) 116, 260, 266, 281, 288, 294
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 2 cut(s) 274, 280
BisI GCNGC 7 cut(s) 121, 130, 274, 277, 280, 283, 295
BlsI GCNGC 7 cut(s) 122, 131, 275, 278, 281, 284, 296
BpuEI CTTGAG 2 cut(s) 175, 253
BsaI GGTCTC 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bse3DI GCAATG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 3 cut(s) 177, 210, 219
BseXI GCAGC 6 cut(s) 116, 260, 266, 281, 288, 294
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 202
BspACI CCGC 1 cut(s) 120
BspCNI CTCAG 3 cut(s) 176, 211, 220
BspMAI CTGCAG 2 cut(s) 278, 284
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 2 cut(s) 111, 129
BstDEI CTNAG 3 cut(s) 163, 219, 228
BstMAI GTCTC 1 cut(s) 161
BstSFI CTRYAG 2 cut(s) 274, 280
BstV1I GCAGC 6 cut(s) 116, 260, 266, 281, 288, 294
BtsI GCAGTG 2 cut(s) 112, 130
BtsIMutI CAGTG 3 cut(s) 112, 130, 177
CaiI CAGNNNCTG 2 cut(s) 111, 129
CviAII CATG 2 cut(s) 142, 288
DdeI CTNAG 3 cut(s) 163, 219, 228
DraI TTTAAA 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 29
FaeI CATG 2 cut(s) 145, 291
FaiI YATR 3 cut(s) 143, 240, 289
FatI CATG 2 cut(s) 141, 287
Fnu4HI GCNGC 7 cut(s) 121, 130, 274, 277, 280, 283, 295
Fsp4HI GCNGC 7 cut(s) 121, 130, 274, 277, 280, 283, 295
GluI GCNGC 7 cut(s) 121, 130, 274, 277, 280, 283, 295
HapII CCGG 1 cut(s) 195
Hin1II CATG 2 cut(s) 145, 291
HindIII AAGCTT 1 cut(s) 18
HpaII CCGG 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 166, 220, 229
HpyCH4V TGCA 6 cut(s) 90, 114, 132, 258, 276, 282
HpyF3I CTNAG 3 cut(s) 163, 219, 228
Hsp92II CATG 2 cut(s) 145, 291
LmnI GCTCC 2 cut(s) 197, 242
LpnPI CCDG 4 cut(s) 53, 162, 208, 216
Lsp1109I GCAGC 6 cut(s) 116, 260, 266, 281, 288, 294
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 1 cut(s) 47
MfeI CAATTG 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 3 cut(s) 29, 34, 91
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 279
MspI CCGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 91
NlaIII CATG 2 cut(s) 145, 291
NmuCI GTSAC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 212
PkrI GCNGC 7 cut(s) 122, 131, 275, 278, 281, 284, 296
PstI CTGCAG 2 cut(s) 278, 284
PstNI CAGNNNCTG 2 cut(s) 111, 129
PvuII CAGCTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 7 cut(s) 121, 130, 274, 277, 280, 283, 295
SduI GDGCHC 1 cut(s) 202
SetI ASST 8 cut(s) 22, 101, 161, 205, 239, 275, 281, 287
SfcI CTRYAG 2 cut(s) 274, 280
SmlI CTYRAG 2 cut(s) 154, 268
SmoI CTYRAG 2 cut(s) 154, 268
Sse9I AATT 3 cut(s) 29, 34, 91
SsiI CCGC 1 cut(s) 120
TasI AATT 3 cut(s) 29, 34, 91
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 112, 130, 184
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 6 cut(s) 129, 273, 276, 279, 282, 294
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 17, 158
TspRI CASTG 3 cut(s) 112, 130, 184
XapI RAATTY 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.