Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000858

Physical Location & Seq

Genomic Coordinates Forward (+)

56099324 .. 56099829

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGTTGGGATCTGTAAGCAGAGAGCCCCATGGCTTGCACATGCACCTGAATCGAACTAGAGACTTCGCCAACAGCCATTTCAGGATGTCGATGTTGATATCCGAAATCTCCAGATTCAAGTTCTGGGTTGTTATTGTTTCATCCTTTTCTCTTCCATCAAACATGTTTTGGTTTATCACTCGATTCGGATTCTGCGATGGTTGCGGAGGTTGCGGCAACTATCCAGACATCACAGAGCATATCTCGGCCTTTGAGACTCTTGTCATGGGAACACAGAAACTAAACTACGGACGACATGAGGCTGGTGTGGCTACCGAGGGAGGCTCCGGTGGCTGCAAGTGTGTCAACTGCACTTGCAACCTTGCAATTGCAAGTGAGCAAGGTCTTGAAGCTTTAATGGAGTCTGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

139

Amino Acids

15.14

Weight (kDa)

6.57

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_2	PF01439	66 - 121	9.2e-06	Metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09390 AT3G09390 AT5G02380
fragaria_vesca	FvH4_3g36020 FvH4_3g36030 FvH4_3g36040 FvH4_6g13710
malus_domestica	MD01G1035800.v1.1 MD03G1093800.v1.1 MD03G1093900.v1.1 MD03G1094500.v1.1 MD04G1128900.v1.1 MD06G1098000.v1.1 MD11G1109100.v1.1 MD11G1109200.v1.1 MD11G1109300.v1.1 MD11G1109400.v1.1 MD12G1141500.v1.1 MD16G1208900.v1.1
prunus_persica	Prupe.6G077800_v2.0.a1 Prupe.6G077900_v2.0.a1 Prupe.6G255100_v2.0.a1
pyrus_communis	pycom03g07550 pycom03g07560 pycom03g07610 pycom03g07620 pycom03g07690 pycom04g11710 pycom11g09020 pycom11g09030 pycom11g09040
rosa_chinensis	RchiOBHm_Chr2g0144901 RchiOBHm_Chr3g0466581 RchiOBHm_Chr5g0064451 RchiOBHm_Chr5g0064481 RchiOBHm_Chr5g0064491
rosa_laevigata	RLG00000004089
rosa_multiflora	Rmu_sc0001125.1_g000004 Rmu_sc0002354.1_g000013 Rmu_sc0005137.1_g000017 Rmu_sc0006937.1_g000003 Rmu_sc0020778.1_g000003 Rmu_sc0040279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016530 Rroxscaffold_1G00016540 Rroxscaffold_1G00016550 Rroxscaffold_6G00414330
rosa_rugosa	Rorug03G0082900 Rorug05G0365100 Rorug05G0365200 Rorug05G0365400 Rorug07G0140500
rosa_samantha	Rh3AG129800 Rh3BG151200 Rh3CG150900 Rh3DG151800 Rh3DG332100 Rh5AG423400 Rh5AG423500 Rh5BG438900 Rh5CG461600 Rh5DG452200 Rh6CG480300 Rh6DG500700
rosa_wichuraiana	Rw3G012270 Rw5G039800 Rw5G039810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	207, 216
AclWI	GGATC	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	121, 392
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	57, 251
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	2 cut(s)	166, 194
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcoDI	GTCTC	2 cut(s)	57, 251
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	217, 337
BlsI	GCNGC	2 cut(s)	218, 338
BmiI	GGNNCC	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	263
BplI	GAGNNNNNCTC	4 cut(s)	230, 262, 311, 343
BpmI	CTGGAG	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	31, 318
BsaWI	WCCGGW	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	31, 318
BseGI	GGATG	2 cut(s)	93, 143
BseXI	GCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	57, 251
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	2 cut(s)	207, 216
BspANI	GGCC	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	31, 318
BssMI	GATC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	93, 143
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	57, 251
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 213, 311, 333
BstNSI	RCATGY	2 cut(s)	46, 169
BstPAI	GACNNNNGTC	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	93, 143
Cac8I	GCNNGC	1 cut(s)	38
CviAII	CATG	5 cut(s)	32, 43, 166, 268, 299
CviJI	RGCY	9 cut(s)	28, 36, 78, 251, 305, 314, 327, 336, 395
CviKI_1	RGCY	9 cut(s)	28, 36, 78, 251, 305, 314, 327, 336, 395
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	5 cut(s)	35, 46, 169, 271, 302
FaiI	YATR	6 cut(s)	33, 44, 167, 243, 269, 300
FatI	CATG	5 cut(s)	31, 42, 165, 267, 298
Fnu4HI	GCNGC	2 cut(s)	217, 337
FokI	GGATG	2 cut(s)	100, 130
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	217, 337
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	2 cut(s)	217, 337
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	5 cut(s)	35, 46, 169, 271, 302
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	6 cut(s)	52, 117, 186, 192, 259, 404
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	106, 191
Hpy188III	TCNNGA	4 cut(s)	85, 114, 227, 389
Hpy8I	GTNNAC	1 cut(s)	349
HpyCH4V	TGCA	7 cut(s)	40, 46, 339, 354, 360, 368, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 213, 311, 333
Hsp92II	CATG	5 cut(s)	35, 46, 169, 271, 302
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	8 cut(s)	62, 70, 112, 127, 240, 291, 343, 393
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	60
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	146
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	253, 413
MnlI	CCTC	4 cut(s)	203, 295, 313, 317
MseI	TTAA	1 cut(s)	398
MspI	CCGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	4 cut(s)	204, 213, 311, 333
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	5 cut(s)	35, 46, 169, 271, 302
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	227
NspI	RCATGY	2 cut(s)	46, 169
PciI	ACATGT	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	4 cut(s)	52, 117, 186, 192
PkrI	GCNGC	2 cut(s)	218, 338
PleI	GAGTC	2 cut(s)	253, 412
PpsI	GAGTC	2 cut(s)	253, 412
PscI	ACATGT	1 cut(s)	165
PshAI	GACNNNNGTC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	2 cut(s)	217, 337
Sau3AI	GATC	1 cut(s)	11
SchI	GAGTC	2 cut(s)	253, 413
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	51, 214, 366, 388, 397
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	2 cut(s)	207, 216
SspMI	CTAG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	3 cut(s)	55, 92, 184
TasI	AATT	1 cut(s)	369
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	4 cut(s)	52, 117, 186, 192
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	17, 132
TspGWI	ACGGA	1 cut(s)	306
XceI	RCATGY	2 cut(s)	46, 169
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.