Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000858

Physical Location & Seq

Genomic Coordinates Reverse (-)

8353349 .. 8354035

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTCTTGCTGCGGAGGAAAGTGTGGCTGCGGAGCTGGCTGCAAGTGCGGCAGTGGCTGCAACGGCTGCGGCAACTATGCTGACATCACAGAGCAGAGCTCTGCCTCTGAGACTCTTGTCCTGGGTGTCGTGGGAACACAGAAACTGAACTATGGACAGGCTGAGGCTGGTGTGGCCACTGAGGGAGGCTGCAGTGGCTGCAAGTGTGTCAACTGCACCTGCGACCCTTGCACTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006873 GO:0006875 GO:0006878 GO:0008150 GO:0009987 GO:0019725 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

81

Amino Acids

7.76

Weight (kDa)

5.05

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_2	PF01439	1 - 79	1.6e-17	Metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09390 AT3G09390 AT5G02380
fragaria_vesca	FvH4_3g36020 FvH4_3g36030 FvH4_3g36040 FvH4_6g13710
malus_domestica	MD01G1035800.v1.1 MD03G1093800.v1.1 MD03G1093900.v1.1 MD03G1094500.v1.1 MD04G1128900.v1.1 MD06G1098000.v1.1 MD11G1109100.v1.1 MD11G1109200.v1.1 MD11G1109300.v1.1 MD11G1109400.v1.1 MD12G1141500.v1.1 MD16G1208900.v1.1
prunus_persica	Prupe.6G077800_v2.0.a1 Prupe.6G077900_v2.0.a1 Prupe.6G255100_v2.0.a1
pyrus_communis	pycom03g07550 pycom03g07560 pycom03g07610 pycom03g07620 pycom03g07690 pycom04g11710 pycom11g09020 pycom11g09030 pycom11g09040
rosa_chinensis	RchiOBHm_Chr2g0144901 RchiOBHm_Chr3g0466581 RchiOBHm_Chr5g0064451 RchiOBHm_Chr5g0064481 RchiOBHm_Chr5g0064491
rosa_laevigata	RLG00000004089
rosa_multiflora	Rmu_sc0001125.1_g000004 Rmu_sc0002354.1_g000013 Rmu_sc0005137.1_g000017 Rmu_sc0006937.1_g000003 Rmu_sc0020778.1_g000003 Rmu_sc0040279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016530 Rroxscaffold_1G00016540 Rroxscaffold_1G00016550 Rroxscaffold_6G00414330
rosa_rugosa	Rorug03G0082900 Rorug05G0365100 Rorug05G0365200 Rorug05G0365400 Rorug07G0140500
rosa_samantha	Rh3AG129800 Rh3BG151200 Rh3CG150900 Rh3DG151800 Rh3DG332100 Rh5AG423400 Rh5AG423500 Rh5BG438900 Rh5CG461600 Rh5DG452200 Rh6CG480300 Rh6DG500700
rosa_wichuraiana	Rw3G012270 Rw5G039800 Rw5G039810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	4 cut(s)	12, 30, 48, 69
AcoI	YGGCCR	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	35, 99
AluI	AGCT	2 cut(s)	35, 99
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	3 cut(s)	57, 145, 198
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	7 cut(s)	9, 27, 39, 57, 66, 189, 198
BalI	TGGCCA	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	9 cut(s)	10, 28, 40, 49, 58, 67, 70, 190, 199
BlsI	GCNGC	9 cut(s)	11, 29, 41, 50, 59, 68, 71, 191, 200
Bme1390I	CCNGG	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	122
BoxI	GACNNNNGTC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	99, 153, 171
BseXI	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	101
BspACI	CCGC	4 cut(s)	12, 30, 48, 69
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	3 cut(s)	100, 154, 172
BspMAI	CTGCAG	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	122
BstAPI	GCANNNNNTGC	3 cut(s)	57, 66, 198
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	3 cut(s)	108, 162, 180
BstMAI	GTCTC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
BsuRI	GGCC	1 cut(s)	176
BtsI	GCAGTG	2 cut(s)	58, 199
BtsIMutI	CAGTG	3 cut(s)	58, 177, 199
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	3 cut(s)	57, 145, 198
DdeI	CTNAG	3 cut(s)	108, 162, 180
EaeI	YGGCCR	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	101
FaiI	YATR	2 cut(s)	78, 153
Fnu4HI	GCNGC	9 cut(s)	10, 28, 40, 49, 58, 67, 70, 190, 199
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	9 cut(s)	10, 28, 40, 49, 58, 67, 70, 190, 199
GluI	GCNGC	9 cut(s)	10, 28, 40, 49, 58, 67, 70, 190, 199
HaeIII	GGCC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4V	TGCA	7 cut(s)	42, 60, 192, 201, 216, 231, 237
HpyF3I	CTNAG	3 cut(s)	108, 162, 180
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	6 cut(s)	21, 107, 134, 143, 153, 232
Lsp1109I	GCAGC	6 cut(s)	14, 26, 44, 53, 176, 185
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	8, 115, 157, 175, 179
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
PaqCI	CACCTGC	1 cut(s)	227
PkrI	GCNGC	9 cut(s)	11, 29, 41, 50, 59, 68, 71, 191, 200
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	194
PstNI	CAGNNNCTG	3 cut(s)	57, 145, 198
SacI	GAGCTC	1 cut(s)	101
SatI	GCNGC	9 cut(s)	10, 28, 40, 49, 58, 67, 70, 190, 199
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	3 cut(s)	37, 101, 221
SfcI	CTRYAG	1 cut(s)	190
SsiI	CCGC	4 cut(s)	12, 30, 48, 69
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	120
TauI	GCSGC	2 cut(s)	51, 72
TscAI	CASTG	3 cut(s)	58, 184, 199
TseI	GCWGC	7 cut(s)	9, 27, 39, 57, 66, 189, 198
TspRI	CASTG	3 cut(s)	58, 184, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.