FvH4_3g36040

Metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000858
Physical Location & Seq
Forward (+)
30928975 .. 30930109
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36040.t1

Sequence Viewer

Length: 192 bp
ATGCCTTGCGGAAACCCAAACTGTTCCTGCGGTTCCAGCTGCTCCTGCGGCGACGACTGCAAGTGCGGAAGGACTGGCTTGAGTTTCTCGGAGAACACCGTTGCTGGGGTTGCGCCGCTAAAGATGTACTATGAGGATTCCGAAATGAATTTTGGAGAGGTAAACTGTGATTCATTCGGCTTTCACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

64

Amino Acids

6.69

Weight (kDa)

4.5

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 9, 30, 48, 66, 116
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 105
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 26
BisI GCNGC 3 cut(s) 40, 49, 116
BlsI GCNGC 3 cut(s) 41, 50, 117
BmiI GGNNCC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 26
BseYI CCCAGC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 105
BspACI CCGC 5 cut(s) 9, 30, 48, 66, 116
BspLI GGNNCC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 23, 100, 167
BstHHI GCGC 1 cut(s) 115
BstMWI GCNNNNNNNGC 5 cut(s) 36, 45, 48, 57, 110
BstV1I GCAGC 1 cut(s) 26
CfoI GCGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 127
CviJI RGCY 3 cut(s) 39, 78, 180
CviKI_1 RGCY 3 cut(s) 39, 78, 180
CviQI GTAC 1 cut(s) 127
FaiI YATR 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 40, 49, 116
Fsp4HI GCNGC 3 cut(s) 40, 49, 116
GlaI GCGC 1 cut(s) 114
GluI GCNGC 3 cut(s) 40, 49, 116
GsaI CCCAGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 115
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 2 cut(s) 137, 170
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 91, 142
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 3 cut(s) 23, 100, 167
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 45, 48, 57, 110
HspAI GCGC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 40, 49, 58, 60, 90
Lsp1109I GCAGC 1 cut(s) 26
MluCI AATT 1 cut(s) 148
MnlI CCTC 2 cut(s) 127, 151
MspA1I CMGCKG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 36, 45, 48, 57, 110
NlaIV GGNNCC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 137, 170
PkrI GCNGC 3 cut(s) 41, 50, 117
PspFI CCCAGC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 39
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 3 cut(s) 40, 49, 116
SetI ASST 2 cut(s) 41, 162
SgeI CNNG 9 cut(s) 18, 39, 48, 57, 73, 87, 91, 100, 117
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 1 cut(s) 148
SsiI CCGC 5 cut(s) 9, 30, 48, 66, 116
TaaI ACNGT 3 cut(s) 23, 100, 167
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 126
TauI GCSGC 2 cut(s) 51, 118
TfiI GAWTC 2 cut(s) 137, 170
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 161, 162
XapI RAATTY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.