MD11G1109100.v1.1

Metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000858
Physical Location & Seq
Reverse (-)
9647306 .. 9648181
876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1109100.v1.1.491

Sequence Viewer

Length: 237 bp
ATGTCTGGTTGCGATAATCCGAACTGTAGCTGTGGCTCCAACTGCTCCTGTGGCAAAGGCTGCAACTGTGCGTACCCTGATTTGGGTTACTTAGAGAACGCTTCTACTGAGACCTTGATTGCTGGGGTTGCACCAGTGAAGATGTTCTATGAGAGGTCTGAGATGAACTATGGAGCAGAGAATGGCTGCAAATATGGATCAAACTGCAGCTACAGTTCATGCGGCTGGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

79

Amino Acids

8.28

Weight (kDa)

4.77

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_2 PF01439 1 - 74 7.8e-16 Metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 205
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 82, 83
AluBI AGCT 2 cut(s) 30, 210
AluI AGCT 2 cut(s) 30, 210
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 205
ApeKI GCWGC 3 cut(s) 60, 186, 207
Asp700I GAANNNNTTC 1 cut(s) 143
BbvI GCAGC 3 cut(s) 47, 173, 219
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 3 cut(s) 25, 205, 211
BisI GCNGC 4 cut(s) 61, 187, 208, 223
BlsI GCNGC 4 cut(s) 62, 188, 209, 224
BmiI GGNNCC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 83
Bse1I ACTGG 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 82, 83
BseMII CTCAG 2 cut(s) 99, 150
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 47, 173, 219
BseYI CCCAGC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 82, 83
BsmAI GTCTC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 1 cut(s) 222
BspCNI CTCAG 2 cut(s) 100, 151
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 134
BssMI GATC 1 cut(s) 197
Bst4CI ACNGT 3 cut(s) 26, 68, 215
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 91, 108, 159
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 4 cut(s) 42, 51, 60, 128
BstSFI CTRYAG 3 cut(s) 25, 205, 211
BstV1I GCAGC 3 cut(s) 47, 173, 219
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 219
CviJI RGCY 6 cut(s) 30, 36, 60, 186, 210, 225
CviKI_1 RGCY 6 cut(s) 30, 36, 60, 186, 210, 225
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 91, 108, 159
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 104
FaeI CATG 1 cut(s) 222
FaiI YATR 4 cut(s) 150, 171, 195, 220
FatI CATG 1 cut(s) 218
Fnu4HI GCNGC 4 cut(s) 61, 187, 208, 223
Fsp4HI GCNGC 4 cut(s) 61, 187, 208, 223
GluI GCNGC 4 cut(s) 61, 187, 208, 223
GsaI CCCAGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 21, 160
HpyCH4III ACNGT 3 cut(s) 26, 68, 215
HpyCH4V TGCA 4 cut(s) 63, 131, 189, 207
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 51, 60, 128
HpyF3I CTNAG 3 cut(s) 91, 108, 159
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 3 cut(s) 41, 50, 173
LpnPI CCDG 5 cut(s) 61, 90, 108, 147, 211
Lsp1109I GCAGC 3 cut(s) 47, 173, 219
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 42, 51, 60, 128
NdeII GATC 1 cut(s) 197
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 62, 188, 209, 224
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 209
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SatI GCNGC 4 cut(s) 61, 187, 208, 223
Sau3AI GATC 1 cut(s) 197
SetI ASST 4 cut(s) 32, 116, 158, 212
SfcI CTRYAG 3 cut(s) 25, 205, 211
SgeI CNNG 7 cut(s) 18, 60, 89, 127, 135, 146, 231
SsiI CCGC 1 cut(s) 222
TaaI ACNGT 3 cut(s) 26, 68, 215
TauI GCSGC 1 cut(s) 225
TscAI CASTG 1 cut(s) 141
TseI GCWGC 3 cut(s) 60, 186, 207
TspDTI ATGAA 2 cut(s) 179, 207
TspRI CASTG 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.