MD16G1208900.v1.1

metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000858
Physical Location & Seq
Forward (+)
19674887 .. 19675129
243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1208900.v1.1.491

Sequence Viewer

Length: 243 bp
ATGTCGTCATGCTGCAGTGGTAAATATGGTTGCGGGTCCGACTGCGGTAGTGGCAGTGGCTGCAACAGGTGCGGGATGGCTCATGATCTGAGCTACATGGAGGGGTCCACCACTGAGACCTTTGTCATAGGAGTTTCTCCCCAGAAGTCGCACTTTGAGGCATCTCAGATGGGAGTTGCAGCTGAGAACGGATGCAAGTACGGGGATAGCTGCACCTGCAACCCCTGCAAGTGCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

81

Amino Acids

8.23

Weight (kDa)

6.01

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_2 PF01439 3 - 78 1.1e-17 Metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 224
AciI CCGC 3 cut(s) 33, 45, 72
AdeI CACNNNGTG 1 cut(s) 240
AfaI GTAC 1 cut(s) 200
AluBI AGCT 3 cut(s) 93, 182, 210
AluI AGCT 3 cut(s) 93, 182, 210
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 110
Alw44I GTGCAC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 60
ApaLI GTGCAC 1 cut(s) 232
ApeKI GCWGC 4 cut(s) 12, 60, 179, 210
AspS9I GGNCC 2 cut(s) 36, 105
AvaII GGWCC 2 cut(s) 36, 105
BaeGI GKGCMC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 47, 191, 197
BccI CCATC 2 cut(s) 70, 163
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 13
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 4 cut(s) 13, 61, 180, 211
BlsI GCNGC 4 cut(s) 14, 62, 181, 212
Bme18I GGWCC 2 cut(s) 36, 105
BmgT120I GGNCC 2 cut(s) 36, 105
BmiI GGNNCC 2 cut(s) 37, 106
BmsI GCATC 2 cut(s) 170, 182
BoxI GACNNNNGTC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 110
BseGI GGATG 2 cut(s) 81, 197
BseMII CTCAG 4 cut(s) 80, 105, 174, 179
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 3 cut(s) 47, 191, 197
BsgI GTGCAG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 3 cut(s) 33, 45, 72
BspCNI CTCAG 4 cut(s) 81, 106, 175, 178
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 37, 106
BspMAI CTGCAG 1 cut(s) 17
BspMI ACCTGC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 110
BssMI GATC 1 cut(s) 85
BstAPI GCANNNNNTGC 3 cut(s) 60, 69, 225
BstDEI CTNAG 4 cut(s) 89, 114, 165, 183
BstF5I GGATG 2 cut(s) 81, 197
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 5 cut(s) 51, 60, 69, 216, 225
BstPAI GACNNNNGTC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 47, 191, 197
BtsCI GGATG 2 cut(s) 81, 197
BtsI GCAGTG 2 cut(s) 22, 61
BtsIMutI CAGTG 3 cut(s) 22, 61, 111
BveI ACCTGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 60
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 36, 105
Csp6I GTAC 1 cut(s) 199
CviAII CATG 3 cut(s) 9, 83, 97
CviJI RGCY 5 cut(s) 60, 80, 93, 182, 210
CviKI_1 RGCY 5 cut(s) 60, 80, 93, 182, 210
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 4 cut(s) 89, 114, 165, 183
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 36, 105
FaeI CATG 3 cut(s) 12, 86, 100
FaiI YATR 5 cut(s) 10, 27, 84, 98, 128
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 3 cut(s) 8, 82, 96
FauI CCCGC 2 cut(s) 26, 65
Fnu4HI GCNGC 4 cut(s) 13, 61, 180, 211
FokI GGATG 2 cut(s) 88, 204
Fsp4HI GCNGC 4 cut(s) 13, 61, 180, 211
GluI GCNGC 4 cut(s) 13, 61, 180, 211
Hin1II CATG 3 cut(s) 12, 86, 100
Hpy166II GTNNAC 2 cut(s) 108, 234
Hpy188I TCNGA 3 cut(s) 40, 90, 168
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 2 cut(s) 108, 234
HpyCH4V TGCA 8 cut(s) 15, 63, 179, 195, 213, 219, 228, 234
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 60, 69, 216, 225
HpyF3I CTNAG 4 cut(s) 89, 114, 165, 183
Hsp92II CATG 3 cut(s) 12, 86, 100
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 4 cut(s) 52, 155, 229, 238
Lsp1109I GCAGC 3 cut(s) 47, 191, 197
LweI GCATC 2 cut(s) 170, 182
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 94, 151
MspA1I CMGCKG 1 cut(s) 182
MwoI GCNNNNNNNGC 5 cut(s) 51, 60, 69, 216, 225
NdeII GATC 1 cut(s) 85
NlaIII CATG 3 cut(s) 12, 86, 100
NlaIV GGNNCC 2 cut(s) 37, 106
PagI TCATGA 1 cut(s) 82
PaqCI CACCTGC 1 cut(s) 224
PkrI GCNGC 4 cut(s) 14, 62, 181, 212
PshAI GACNNNNGTC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 37, 106
PspPI GGNCC 2 cut(s) 36, 105
PstI CTGCAG 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SatI GCNGC 4 cut(s) 13, 61, 180, 211
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 36, 105
SduI GDGCHC 1 cut(s) 236
SetI ASST 6 cut(s) 71, 95, 122, 184, 212, 218
SfaNI GCATC 2 cut(s) 170, 182
SfcI CTRYAG 1 cut(s) 13
SinI GGWCC 2 cut(s) 36, 105
SsiI CCGC 3 cut(s) 33, 45, 72
TscAI CASTG 3 cut(s) 22, 61, 118
TseI GCWGC 4 cut(s) 12, 60, 179, 210
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 3 cut(s) 22, 61, 118
VneI GTGCAC 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 36, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.