pycom04g11710

metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000858
Physical Location & Seq
Forward (+)
14559621 .. 14560263
643 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11710.2

Sequence Viewer

Length: 243 bp
ATGTCGTCGTGCTGCGGTGGTAAATGTGGTTGCGGGTCCAGCTGCAGCTGCGGCAGTGGCTGCAACGGGTGTGGGATGGCACCCGATCTGAGCTACATGGAGGGGTCCACCACTGAGACCCTTGTCTTGGGAGTTGCTCCTCAGAAGTCGCACTTTGAGGCATCTGAGATGGGAGTTGCTGCTGAGAACGGATGCAAGTGCGGGGACAGCTGCACCTGCAACCCCTGCAAGTGCGGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

81

Amino Acids

7.87

Weight (kDa)

5.09

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 5 cut(s) 15, 33, 51, 201, 234
AfiI CCNNNNNNNGG 1 cut(s) 127
AluBI AGCT 4 cut(s) 42, 48, 93, 210
AluI AGCT 4 cut(s) 42, 48, 93, 210
Alw26I GTCTC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 60
ApeKI GCWGC 7 cut(s) 12, 42, 45, 48, 60, 179, 210
AspS9I GGNCC 2 cut(s) 36, 105
AvaII GGWCC 2 cut(s) 36, 105
BanI GGYRCC 1 cut(s) 79
BbvI GCAGC 6 cut(s) 29, 35, 47, 57, 166, 197
BccI CCATC 2 cut(s) 70, 163
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 9 cut(s) 13, 43, 46, 49, 52, 61, 180, 211, 235
BlsI GCNGC 9 cut(s) 14, 44, 47, 50, 53, 62, 181, 212, 236
Bme18I GGWCC 2 cut(s) 36, 105
BmgT120I GGNCC 2 cut(s) 36, 105
BmiI GGNNCC 3 cut(s) 37, 81, 106
BmsI GCATC 2 cut(s) 170, 182
BoxI GACNNNNGTC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 81, 197
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 5 cut(s) 80, 105, 155, 156, 174
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 6 cut(s) 29, 35, 47, 57, 166, 197
BsgI GTGCAG 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 5 cut(s) 15, 33, 51, 201, 234
BspCNI CTCAG 5 cut(s) 81, 106, 154, 157, 175
BspLI GGNNCC 3 cut(s) 37, 81, 106
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 110
BssMI GATC 1 cut(s) 85
BstAPI GCANNNNNTGC 2 cut(s) 60, 225
BstDEI CTNAG 5 cut(s) 89, 114, 141, 165, 183
BstF5I GGATG 2 cut(s) 81, 197
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 9 cut(s) 39, 48, 51, 57, 60, 207, 216, 225, 234
BstPAI GACNNNNGTC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 6 cut(s) 29, 35, 47, 57, 166, 197
BtsCI GGATG 2 cut(s) 81, 197
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 111
BveI ACCTGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 36, 105
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 1 cut(s) 97
CviJI RGCY 5 cut(s) 42, 48, 60, 93, 210
CviKI_1 RGCY 5 cut(s) 42, 48, 60, 93, 210
DdeI CTNAG 5 cut(s) 89, 114, 141, 165, 183
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 36, 105
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 218
FatI CATG 1 cut(s) 96
FauI CCCGC 2 cut(s) 26, 194
Fnu4HI GCNGC 9 cut(s) 13, 43, 46, 49, 52, 61, 180, 211, 235
FokI GGATG 2 cut(s) 88, 204
Fsp4HI GCNGC 9 cut(s) 13, 43, 46, 49, 52, 61, 180, 211, 235
GluI GCNGC 9 cut(s) 13, 43, 46, 49, 52, 61, 180, 211, 235
Hin1II CATG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 90, 144, 166
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 10
HpyCH4V TGCA 6 cut(s) 45, 63, 195, 213, 219, 228
HpyF10VI GCNNNNNNNGC 9 cut(s) 39, 48, 51, 57, 60, 207, 216, 225, 234
HpyF3I CTNAG 5 cut(s) 89, 114, 141, 165, 183
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 52, 229, 238
Lsp1109I GCAGC 6 cut(s) 29, 35, 47, 57, 166, 197
LweI GCATC 2 cut(s) 170, 182
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MnlI CCTC 3 cut(s) 94, 150, 151
MspA1I CMGCKG 3 cut(s) 42, 48, 210
MwoI GCNNNNNNNGC 9 cut(s) 39, 48, 51, 57, 60, 207, 216, 225, 234
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 3 cut(s) 37, 81, 106
PaqCI CACCTGC 1 cut(s) 224
PkrI GCNGC 9 cut(s) 14, 44, 47, 50, 53, 62, 181, 212, 236
PshAI GACNNNNGTC 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 37, 81, 106
PspPI GGNCC 2 cut(s) 36, 105
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 60
PvuII CAGCTG 3 cut(s) 42, 48, 210
SatI GCNGC 9 cut(s) 13, 43, 46, 49, 52, 61, 180, 211, 235
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 36, 105
SetI ASST 5 cut(s) 44, 50, 95, 212, 218
SfaNI GCATC 2 cut(s) 170, 182
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 2 cut(s) 36, 105
SsiI CCGC 5 cut(s) 15, 33, 51, 201, 234
TauI GCSGC 2 cut(s) 54, 237
TscAI CASTG 2 cut(s) 61, 118
TseI GCWGC 7 cut(s) 12, 42, 45, 48, 60, 179, 210
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 2 cut(s) 61, 118
VpaK11BI GGWCC 2 cut(s) 36, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.