Rorug05G0365200

Metallothionein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000858
Physical Location & Seq
Forward (+)
48624465 .. 48625927
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0365200.1

Sequence Viewer

Length: 738 bp
ATGAATTCTTCTCTATTAGCTCCATACTCAGATGAGAAAATCAAGAAGCCTTTATTCCAGATTAATCCTTCAAAATCACCTGGACCTGACGAAGCCTTTGTGTTGGAGTGCACTATCTTCAAGTCTATTCTAAATGTTTATGAGCGTGCTTCTGGCCAAAGGATTAATCTACAGAAGAGCAGTGTCTTCAGCAAGAATGAGCATCCTGATACTAAAGCTAATTTAGCTTCTATTTTGGGGGTGCAGTGTGTTGAGGACCGTGGCAGATATCTAGGGCTTCCCCTTCATGTGGGAAAATCAAAAGTGGCAATTTTTTCTTACCTTAAGGAAAGATTAACTAAGAAGTTGATCAGTTGGCGCACAAAAACCATGAGTTCTGCAGGGAAGGAGATTTTGATTAAGGCAGTGGCTCAAGTTATCCCGACTTATGTCATGAGTTGTTATATGCTTCCTAAAAGTCTCTGTGATGATCTCCACCAACTTTGTGCTCAATTCTTTTGGGGAGATTTAGATTCTAATCGCAAAATTCACTGGCGGTCATGGGATAGGATGTGCCTGTCTAAAAGTGAAGGAGGCTTAGGTTTCAAGAATATGCATGCTCATAATTTATCTATGCTTGCAAAACAGAGGTGGAGGTTAATCATTAATCCTAATTCCTTGTTGTCTCGTTTGCTCACGGCTAGATATTTTCTGAATGGTTCTTTTTTGGATGCTGATATAGGGGATTCCCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallothio_2

Protein Analysis

245

Amino Acids

27.75

Weight (kDa)

9.55

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 535
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 2 cut(s) 4, 525
AcuI CTGAAG 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 289
AflII CTTAAG 1 cut(s) 323
AgsI TTSAA 3 cut(s) 72, 121, 586
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 20, 218, 227
AluI AGCT 3 cut(s) 20, 218, 227
Alw21I GWGCWC 2 cut(s) 113, 490
Alw26I GTCTC 2 cut(s) 464, 669
Alw44I GTGCAC 1 cut(s) 109
AoxI GGCC 1 cut(s) 154
ApaLI GTGCAC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 4, 525
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AseI ATTAAT 3 cut(s) 63, 165, 645
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 83, 256
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 2 cut(s) 83, 256
BaeGI GKGCMC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 113, 490
BceAI ACGGC 1 cut(s) 693
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 464, 669
BfaI CTAG 2 cut(s) 272, 681
BfmI CTRYAG 2 cut(s) 170, 378
BfrI CTTAAG 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 2 cut(s) 83, 256
BmgT120I GGNCC 2 cut(s) 83, 256
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 211, 700
BoxI GACNNNNGTC 1 cut(s) 428
BpiI GAAGAC 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 536
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 3 cut(s) 202, 555, 715
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 263
BshFI GGCC 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 113, 490
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 2 cut(s) 464, 669
BsnI GGCC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 113, 490
Bsp143I GATC 2 cut(s) 348, 469
BspACI CCGC 1 cut(s) 535
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 382
BspQI GCTCTTC 1 cut(s) 170
BspTI CTTAAG 1 cut(s) 323
BsrI ACTGG 1 cut(s) 536
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 348, 469
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 147, 597, 618
BstDEI CTNAG 3 cut(s) 28, 339, 577
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 3 cut(s) 202, 555, 715
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 2 cut(s) 351, 472
BstMAI GTCTC 2 cut(s) 464, 669
BstMBI GATC 2 cut(s) 348, 469
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 599
BstPAI GACNNNNGTC 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 170, 378
BstSLI GKGCMC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 3 cut(s) 202, 555, 715
BtsI GCAGTG 3 cut(s) 187, 251, 411
BtsIMutI CAGTG 4 cut(s) 187, 251, 411, 529
Cac8I GCNNGC 3 cut(s) 147, 597, 618
CciI TCATGA 1 cut(s) 432
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 83, 256
CspCI CAANNNNNGTGG 2 cut(s) 464, 499
CviAII CATG 5 cut(s) 287, 370, 433, 540, 596
DdeI CTNAG 3 cut(s) 28, 339, 577
DpnI GATC 2 cut(s) 350, 471
DpnII GATC 2 cut(s) 348, 469
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco32I GATATC 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 83, 256
Eco57I CTGAAG 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 79
EcoRV GATATC 1 cut(s) 269
EcoT22I ATGCAT 1 cut(s) 597
FaeI CATG 5 cut(s) 290, 373, 436, 543, 599
FatI CATG 5 cut(s) 286, 369, 432, 539, 595
FbaI TGATCA 1 cut(s) 348
FokI GGATG 3 cut(s) 189, 562, 722
FspBI CTAG 2 cut(s) 272, 681
GlaI GCGC 1 cut(s) 359
HaeIII GGCC 1 cut(s) 156
HhaI GCGC 1 cut(s) 360
Hin1II CATG 5 cut(s) 290, 373, 436, 543, 599
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HinfI GANTC 2 cut(s) 512, 725
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 31, 693
Hpy188III TCNNGA 6 cut(s) 43, 58, 206, 421, 433, 586
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 4 cut(s) 78, 293, 379, 563
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 5 cut(s) 111, 244, 380, 595, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 3 cut(s) 28, 339, 577
Hsp92II CATG 5 cut(s) 290, 373, 436, 543, 599
HspAI GCGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 2 cut(s) 348, 469
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 9 cut(s) 66, 71, 93, 99, 138, 219, 366, 517, 569
LweI GCATC 2 cut(s) 211, 700
MaeI CTAG 2 cut(s) 272, 681
MalI GATC 2 cut(s) 350, 471
MboI GATC 2 cut(s) 348, 469
MboII GAAGA 3 cut(s) 109, 178, 187
MhlI GDGCHC 2 cut(s) 113, 490
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 7 cut(s) 4, 220, 309, 491, 525, 604, 652
MluNI TGGCCA 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 4 cut(s) 247, 566, 621, 627
Mox20I TGGCCA 1 cut(s) 156
Mph1103I ATGCAT 1 cut(s) 597
MscI TGGCCA 1 cut(s) 156
MseI TTAA 8 cut(s) 63, 165, 324, 335, 399, 638, 645, 736
Msp20I TGGCCA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 2 cut(s) 348, 469
NlaIII CATG 5 cut(s) 290, 373, 436, 543, 599
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 1 cut(s) 599
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 512, 725
PshAI GACNNNNGTC 1 cut(s) 428
PshBI ATTAAT 3 cut(s) 63, 165, 645
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspPI GGNCC 2 cut(s) 83, 256
PstI CTGCAG 1 cut(s) 382
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 8 cut(s) 63, 165, 324, 335, 399, 638, 645, 736
Sau3AI GATC 2 cut(s) 348, 469
Sau96I GGNCC 2 cut(s) 83, 256
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 113, 490
SetI ASST 9 cut(s) 22, 82, 88, 220, 229, 324, 583, 632, 638
SfaNI GCATC 2 cut(s) 211, 700
SfcI CTRYAG 2 cut(s) 170, 378
SinI GGWCC 2 cut(s) 83, 256
SmlI CTYRAG 2 cut(s) 323, 411
SmoI CTYRAG 2 cut(s) 323, 411
SphI GCATGC 1 cut(s) 599
Sse9I AATT 7 cut(s) 4, 220, 309, 491, 525, 604, 652
SsiI CCGC 1 cut(s) 535
SspMI CTAG 2 cut(s) 272, 681
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 260
TasI AATT 7 cut(s) 4, 220, 309, 491, 525, 604, 652
TfiI GAWTC 2 cut(s) 512, 725
Tru1I TTAA 8 cut(s) 63, 165, 324, 335, 399, 638, 645, 736
Tru9I TTAA 8 cut(s) 63, 165, 324, 335, 399, 638, 645, 736
TscAI CASTG 4 cut(s) 187, 251, 411, 536
TspDTI ATGAA 2 cut(s) 17, 275
TspRI CASTG 4 cut(s) 187, 251, 411, 536
Vha464I CTTAAG 1 cut(s) 323
VneI GTGCAC 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 83, 256
VspI ATTAAT 3 cut(s) 63, 165, 645
XapI RAATTY 2 cut(s) 4, 525
XceI RCATGY 1 cut(s) 599
XspI CTAG 2 cut(s) 272, 681
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.