Rh3DG332100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
36812157 .. 36812946
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG332100.1

Sequence Viewer

Length: 267 bp
ATGGGTGTCGTGGGAACACAGAAACTGAACTATGGACTACATGAGGCTGGTGTGGGTACCGAGGGAGGCTCCAGTGGCTGCAAGTGTGTCAACTACACCTGCAACCTTGCAATTGCAAGTGGGCGAGGTCTTGAAGCTTTAATGGAGTCTGGTCTTGAAGAAGAAAAGCTTGATAGAATGGTTGCAATATTGTATGGAGAAATTACCTCAATCATTGTTTTGCCGTCTTTTGGTGAAGCTGTGCTTTTTGTGGAAAGCAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.24

Weight (kDa)

4.64

Isoelectric Point (pI)

21.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 107
Acc65I GGTACC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 56
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 134, 158
AluBI AGCT 3 cut(s) 137, 169, 239
AluI AGCT 3 cut(s) 137, 169, 239
AlwNI CAGNNNCTG 2 cut(s) 25, 78
ApeKI GCWGC 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 245
BanI GGYRCC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 58, 70
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 58, 70
BspMI ACCTGC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 107
CaiI CAGNNNCTG 2 cut(s) 25, 78
Csp6I GTAC 1 cut(s) 57
CviAII CATG 1 cut(s) 41
CviJI RGCY 6 cut(s) 47, 69, 78, 137, 169, 239
CviKI_1 RGCY 6 cut(s) 47, 69, 78, 137, 169, 239
CviQI GTAC 1 cut(s) 57
FaeI CATG 1 cut(s) 44
FaiI YATR 3 cut(s) 33, 42, 195
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 228, 260
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 55
Hin1II CATG 1 cut(s) 44
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 2 cut(s) 135, 167
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 131, 155
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 81, 102, 110, 116, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 44
KpnI GGTACC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 33, 85, 112, 135
Lsp1109I GCAGC 1 cut(s) 65
MboII GAAGA 2 cut(s) 170, 173
MfeI CAATTG 1 cut(s) 111
MluCI AATT 2 cut(s) 111, 201
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 5 cut(s) 37, 55, 59, 119, 217
MseI TTAA 1 cut(s) 140
MunI CAATTG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 75
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 58, 70
PaqCI CACCTGC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 58, 70
PstNI CAGNNNCTG 2 cut(s) 25, 78
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 79
SchI GAGTC 1 cut(s) 155
SetI ASST 7 cut(s) 101, 108, 130, 139, 171, 209, 241
Sse9I AATT 2 cut(s) 111, 201
SspI AATATT 1 cut(s) 189
TasI AATT 2 cut(s) 111, 201
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 78
TspRI CASTG 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.