FvH4_4g13820
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
17338365 .. 17340836
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13820.t1

Sequence Viewer

Length: 444 bp
ATGATATGGAAGTTGATAAAGCCGAGTGGTCTACTATTACATCGTGAGTTTTCTGATCTGATTGAGCATACCGGATTTGGATGGGATCCTATTAGAAACACTATTACCGCATCAGAGGAAGTATGGGCTACATATGTCAAGAGAGTGTCAGGAGTGAAACCCTATCGTAAGAAAGGCTTGGAGCATTATGAAATTTTAAGAGAAATATTTGACACTACTACTTCAACAGGTCAACTACATTATGCCTCTAGCCAAGTGCCTCCCAATTCAGATGATGAGCGAGAGTTAGAGAAAAAGATTCTTAACAATGGAGTTCATATCAATCTTGATGATCAGGATTTCAATGTCAATAATGCTCAAACTGAGACAAGGGCAAAAAGAAAAGCTGTGACAAAGGCTCCATCTTCGGGACAAAATGGAAGCATACTTAGAAATTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.82

Weight (kDa)

7.99

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 80, 93
AcsI RAATTY 2 cut(s) 192, 433
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 225, 343
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 80, 93
ApoI RAATTY 2 cut(s) 192, 433
BamHI GGATCC 1 cut(s) 85
BccI CCATC 2 cut(s) 75, 409
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 87, 399
BmsI GCATC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 1 cut(s) 407
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 55, 85, 331
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 87, 399
BspPI GGATC 2 cut(s) 80, 93
BssMI GATC 3 cut(s) 55, 85, 331
BstDEI CTNAG 2 cut(s) 363, 428
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 3 cut(s) 58, 88, 334
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 55, 85, 331
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtsCI GGATG 1 cut(s) 86
CviJI RGCY 6 cut(s) 22, 128, 177, 252, 386, 398
CviKI_1 RGCY 6 cut(s) 22, 128, 177, 252, 386, 398
DdeI CTNAG 2 cut(s) 363, 428
DpnI GATC 3 cut(s) 57, 87, 333
DpnII GATC 3 cut(s) 55, 85, 331
FaiI YATR 9 cut(s) 7, 69, 124, 133, 135, 189, 243, 318, 425
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 423
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 31
FokI GGATG 1 cut(s) 93
FspBI CTAG 1 cut(s) 249
HapII CCGG 1 cut(s) 72
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 32, 233
Hpy188I TCNGA 4 cut(s) 55, 60, 115, 271
Hpy188III TCNNGA 6 cut(s) 44, 139, 150, 326, 335, 408
Hpy8I GTNNAC 2 cut(s) 32, 233
HpyF3I CTNAG 2 cut(s) 363, 428
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 55, 85, 331
LmnI GCTCC 2 cut(s) 181, 403
LpnPI CCDG 4 cut(s) 85, 135, 213, 320
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 57, 87, 333
MboI GATC 3 cut(s) 55, 85, 331
MboII GAAGA 1 cut(s) 396
MflI RGATCY 1 cut(s) 85
MluCI AATT 3 cut(s) 192, 265, 433
MnlI CCTC 3 cut(s) 109, 256, 270
MseI TTAA 2 cut(s) 197, 303
MspI CCGG 1 cut(s) 72
NdeI CATATG 1 cut(s) 133
NdeII GATC 3 cut(s) 55, 85, 331
NlaIV GGNNCC 2 cut(s) 87, 399
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 87, 399
PsuI RGATCY 1 cut(s) 85
SaqAI TTAA 2 cut(s) 197, 303
Sau3AI GATC 3 cut(s) 55, 85, 331
SetI ASST 2 cut(s) 232, 388
SfaNI GCATC 1 cut(s) 119
Sse9I AATT 3 cut(s) 192, 265, 433
SsiI CCGC 1 cut(s) 108
SspI AATATT 1 cut(s) 207
SspMI CTAG 1 cut(s) 249
TasI AATT 3 cut(s) 192, 265, 433
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 197, 303
Tru9I TTAA 2 cut(s) 197, 303
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 204, 305
XapI RAATTY 2 cut(s) 192, 433
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.