Rw7G041100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001153
Physical Location & Seq
Forward (+)
64047468 .. 64048403
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041100.1

Sequence Viewer

Length: 846 bp
ATGGAAGTCGATGACAAAGCCGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTGAAAAAAGGAGATATGCAAACATCCACTTTCAAAAAGAAAATTTGGATGGAAATAAGTGATGAGTTGTTTGCTGAAACTATGAAAAGATACACTGTGGCACAACTCAAGTCTAAGTTCAATAGACTAAGCAAAAAACATCGTGAATTTTCTGATTTGATTGAGAATACCGGATTTGGATGGGACCCTATTGCAAACACTGTTACTGCATCAGAGGAAGTATGGGCTACTTATATTAAGAGTACCAGAGTGAAGCCCTATAGTAAGAAAGGCTTGGAACATTATGAAACTTTAGGGGAAATATTCAATACTACTACTACAACTGGTCAACTACATTATGCCTCTAGCCAGCCCCCTCCCAATTCAGATGATGAGCGCGAGTTAGAGAATAAGTTTAGTAACAATGGAGTTCACATCAATCTTGATGAGGATTTCGATGTTAATAATCAAAATGAGATCAGAGGGAAAAGAAAAGCTGTGACAGAGGCTCCACCTTCAGAGCGTCGTACAAAAAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGCGAAGTGATGAAAGAAAAGCTCCAACAAAGAAAAGAAAAAAATGCTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGTGACATTGATCATGCCACATTTATTAAAATGATGGATAAACTTATAGTTGTTGAATGGAGGAGGCTTTTCCTTACCATGTCAAATGAAAGAAGGAGAGCTTGGCTAGCTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

281

Amino Acids

33.01

Weight (kDa)

6.43

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 8 - 102 9e-21 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 8 - 76 7.9e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 450
AcsI RAATTY 4 cut(s) 47, 114, 218, 615
AcuI CTGAAG 2 cut(s) 552, 690
AfaI GTAC 3 cut(s) 316, 580, 689
AgsI TTSAA 5 cut(s) 106, 193, 379, 698, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 811, 843
AluBI AGCT 4 cut(s) 548, 643, 827, 836
AluI AGCT 4 cut(s) 548, 643, 827, 836
ApoI RAATTY 4 cut(s) 47, 114, 218, 615
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 740
AsuNHI GCTAGC 1 cut(s) 832
AvaII GGWCC 1 cut(s) 256
BccI CCATC 3 cut(s) 115, 246, 754
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BclI TGATCA 1 cut(s) 736
BfaI CTAG 3 cut(s) 417, 833, 844
BfmI CTRYAG 1 cut(s) 331
BmcAI AGTACT 1 cut(s) 689
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 3 cut(s) 257, 258, 561
BmsI GCATC 1 cut(s) 290
BmtI GCTAGC 1 cut(s) 836
BplI GAGNNNNNCTC 2 cut(s) 674, 706
BpuEI CTTGAG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bse1I ACTGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 95, 126, 257
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 802
Bsh1236I CGCG 1 cut(s) 450
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 269, 605
BsmFI GGGAC 2 cut(s) 269, 605
Bsp143I GATC 2 cut(s) 528, 736
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 257, 258, 561
BspOI GCTAGC 1 cut(s) 836
BsrI ACTGG 1 cut(s) 400
BssMI GATC 2 cut(s) 528, 736
Bst4CI ACNGT 2 cut(s) 169, 274
Bst6I CTCTTC 2 cut(s) 666, 693
BstC8I GCNNGC 2 cut(s) 422, 834
BstDEI CTNAG 4 cut(s) 33, 186, 200, 610
BstF5I GGATG 3 cut(s) 95, 126, 257
BstFNI CGCG 1 cut(s) 450
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 2 cut(s) 531, 739
BstMBI GATC 2 cut(s) 528, 736
BstMWI GCNNNNNNNGC 1 cut(s) 833
BstNSI RCATGY 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 331
BstUI CGCG 1 cut(s) 450
BtsCI GGATG 3 cut(s) 95, 126, 257
BtsIMutI CAGTG 2 cut(s) 165, 270
Cac8I GCNNGC 2 cut(s) 422, 834
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 563
Csp6I GTAC 3 cut(s) 315, 579, 688
CviAII CATG 4 cut(s) 65, 71, 740, 805
CviQI GTAC 3 cut(s) 315, 579, 688
DdeI CTNAG 4 cut(s) 33, 186, 200, 610
DpnI GATC 2 cut(s) 530, 738
DpnII GATC 2 cut(s) 528, 736
Eam1104I CTCTTC 2 cut(s) 666, 693
EarI CTCTTC 2 cut(s) 666, 693
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 552, 690
EcoO109I RGGNCCY 1 cut(s) 256
FaeI CATG 4 cut(s) 68, 74, 743, 808
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 811, 843
FaqI GGGAC 2 cut(s) 269, 605
FatI CATG 4 cut(s) 64, 70, 739, 804
FbaI TGATCA 1 cut(s) 736
FokI GGATG 3 cut(s) 82, 133, 264
FspBI CTAG 3 cut(s) 417, 833, 844
GlaI GCGC 1 cut(s) 449
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 450
Hin1II CATG 4 cut(s) 68, 74, 743, 808
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 1 cut(s) 401
HindII GTYRAC 1 cut(s) 401
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 2 cut(s) 401, 484
Hpy188I TCNGA 5 cut(s) 226, 286, 439, 533, 571
Hpy188III TCNNGA 2 cut(s) 215, 494
Hpy8I GTNNAC 2 cut(s) 401, 484
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 3 cut(s) 35, 576, 813
HpyCH4III ACNGT 2 cut(s) 169, 274
HpyCH4V TGCA 5 cut(s) 64, 91, 266, 281, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 833
HpyF3I CTNAG 4 cut(s) 33, 186, 200, 610
Hsp92II CATG 4 cut(s) 68, 74, 743, 808
HspAI GCGC 1 cut(s) 448
KflI GGGWCCC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 2 cut(s) 528, 736
LmnI GCTCC 2 cut(s) 565, 648
LpnPI CCDG 4 cut(s) 256, 331, 381, 434
LweI GCATC 1 cut(s) 290
MaeI CTAG 3 cut(s) 417, 833, 844
MaeIII GTNAC 4 cut(s) 274, 470, 550, 728
MalI GATC 2 cut(s) 530, 738
MboI GATC 2 cut(s) 528, 736
MboII GAAGA 2 cut(s) 683, 710
MluCI AATT 6 cut(s) 47, 114, 218, 433, 615, 711
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 8 cut(s) 280, 424, 438, 493, 527, 550, 780, 783
MseI TTAA 3 cut(s) 309, 513, 753
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 833
NdeII GATC 2 cut(s) 528, 736
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 4 cut(s) 68, 74, 743, 808
NlaIV GGNNCC 3 cut(s) 257, 258, 561
NmuCI GTSAC 2 cut(s) 550, 728
NspI RCATGY 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 257, 258, 561
PspPI GGNCC 1 cut(s) 256
PspPPI RGGWCCY 1 cut(s) 256
RsaI GTAC 3 cut(s) 316, 580, 689
RsaNI GTAC 3 cut(s) 315, 579, 688
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 309, 513, 753
Sau3AI GATC 2 cut(s) 528, 736
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 689
SetI ASST 5 cut(s) 550, 568, 645, 829, 838
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 331
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 6 cut(s) 47, 114, 218, 433, 615, 711
SspI AATATT 1 cut(s) 375
SspMI CTAG 3 cut(s) 417, 833, 844
TaaI ACNGT 2 cut(s) 169, 274
TaqI TCGA 2 cut(s) 9, 507
TasI AATT 6 cut(s) 47, 114, 218, 433, 615, 711
TatI WGTACW 1 cut(s) 687
Tru1I TTAA 3 cut(s) 309, 513, 753
Tru9I TTAA 3 cut(s) 309, 513, 753
TscAI CASTG 2 cut(s) 172, 277
TseFI GTSAC 2 cut(s) 550, 728
Tsp45I GTSAC 2 cut(s) 550, 728
TspDTI ATGAA 6 cut(s) 40, 54, 170, 372, 647, 828
TspRI CASTG 2 cut(s) 172, 277
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 4 cut(s) 47, 114, 218, 615
XceI RCATGY 1 cut(s) 74
XspI CTAG 3 cut(s) 417, 833, 844
ZrmI AGTACT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.