Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

18756159 .. 18757085

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTGTATGAAGAGACAAAAAAAGGCTTGCAAACCAACACTTTAGAAAAGAATCAGTGGGATGCGATTGACATGAAGTTGTTTGACAAATATGGTAAGAGATACACTCGTGAAAAATTGAAGCAAAAATATAATCGGTTGCGGAAGATTCACCGTGAGTTTGCCAAGCTTGTTAATCATACTATGATGGGTTGGGACCCTGTTGCAAACACTGTTCAAGCATCGGATGAAGTTTGGGCAGCTTATATTAAGAAAAACAAGTTTGCTAGCCGTTTATGTAGCAAAGGGTGTTCTCATTATGAGGTGCTTGGACAGATTTTCAATAATACCACTGCTACTGGTCAAATGCAGTATGCATCCACCAATTCTCCTCCAAATTCTGATTTTGAGAGAGAGTTAGAAGCTGGGTTTCTTACCACTGGTGCACACATTAGACAAAGTACCGGAAGTGATTCAAGGGCATTTAGTGAGGGACATGAAGGAACCAGTACCAAGCGTCGTGCTCTTTTTCCTCCATGTGATCTTTCCTCGAAGTCAAAGCCATCCAAGTCAACCAAAATGGACGAAGCTATTGCAGCTTGGGCAAAGTCACTTAATGCCAAGACTGAGGCTACATTGGAAAAGGTTAAGCGTAAAAGAGAGAGGGAAGTATCCTCCCCATTGAGAGAGTTAAGTACCATTGAAGATTGTATGGAAGTACTTGAGGGCATGGAAGATATTGATGATACCGCTTATTTGAAAGCTTTGGAGAAGTTCACTAGCTCGGATTGGAGGAGGATGTTTATGAAGATGTCTGAGTCGAGGAAAAAATTATGGCTCAATAGTCTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

278

Amino Acids

31.89

Weight (kDa)

9.35

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	2 - 82	1.4e-14	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	142, 729
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	4 cut(s)	442, 490, 676, 699
AgsI	TTSAA	6 cut(s)	121, 218, 322, 456, 683, 739
AluBI	AGCT	7 cut(s)	169, 242, 404, 569, 578, 743, 762
AluI	AGCT	7 cut(s)	169, 242, 404, 569, 578, 743, 762
Alw21I	GWGCWC	2 cut(s)	427, 505
Alw26I	GTCTC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	423
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	239, 575
ApoI	RAATTY	1 cut(s)	376
Asp700I	GAANNNNTTC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	143
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	94, 127
BauI	CACGAG	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	427, 505
BbvI	GCAGC	2 cut(s)	251, 587
BccI	CCATC	2 cut(s)	181, 550
BceAI	ACGGC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciVI	GTATCC	1 cut(s)	661
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	267, 759
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	240, 576
BlsI	GCNGC	2 cut(s)	241, 577
BmcAI	AGTACT	1 cut(s)	699
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	197, 198, 484
BmsI	GCATC	3 cut(s)	52, 230, 365
BmtI	GCTAGC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpuEI	CTTGAG	1 cut(s)	722
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bse1I	ACTGG	3 cut(s)	343, 424, 486
BseGI	GGATG	5 cut(s)	67, 232, 356, 542, 783
BseMII	CTCAG	2 cut(s)	597, 786
BseNI	ACTGG	3 cut(s)	343, 424, 486
BseRI	GAGGAG	2 cut(s)	360, 787
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	2 cut(s)	251, 587
BseYI	CCCAGC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	427, 505
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	209, 486
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	209, 486
Bsp1286I	GDGCHC	2 cut(s)	427, 505
Bsp143I	GATC	1 cut(s)	520
BspACI	CCGC	2 cut(s)	142, 729
BspCNI	CTCAG	2 cut(s)	598, 787
BspLI	GGNNCC	3 cut(s)	197, 198, 484
BspOI	GCTAGC	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	343, 424, 486
BssMI	GATC	1 cut(s)	520
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	155, 214
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	29, 268
BstDEI	CTNAG	2 cut(s)	606, 795
BstF5I	GGATG	5 cut(s)	67, 232, 356, 542, 783
BstKTI	GATC	1 cut(s)	523
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	575, 581
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	251, 587
BsuI	GTATCC	1 cut(s)	661
BtsCI	GGATG	5 cut(s)	67, 232, 356, 542, 783
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	4 cut(s)	62, 210, 330, 417
Cac8I	GCNNGC	2 cut(s)	29, 268
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	4 cut(s)	441, 489, 675, 698
CviAII	CATG	4 cut(s)	73, 476, 516, 709
CviQI	GTAC	4 cut(s)	441, 489, 675, 698
DdeI	CTNAG	2 cut(s)	606, 795
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	4 cut(s)	76, 479, 519, 712
FaqI	GGGAC	2 cut(s)	209, 486
FatI	CATG	4 cut(s)	72, 475, 515, 708
Fnu4HI	GCNGC	2 cut(s)	240, 576
FokI	GGATG	5 cut(s)	74, 239, 343, 529, 790
Fsp4HI	GCNGC	2 cut(s)	240, 576
FspBI	CTAG	2 cut(s)	267, 759
GluI	GCNGC	2 cut(s)	240, 576
GsaI	CCCAGC	1 cut(s)	408
HapII	CCGG	1 cut(s)	444
HgaI	GACGC	1 cut(s)	485
Hin1II	CATG	4 cut(s)	76, 479, 519, 712
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	2 cut(s)	167, 741
HinfI	GANTC	4 cut(s)	52, 148, 452, 797
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	425, 552, 756
Hpy188I	TCNGA	4 cut(s)	226, 382, 766, 796
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	3 cut(s)	425, 552, 756
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	155, 214
HpyCH4V	TGCA	6 cut(s)	31, 206, 349, 356, 425, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	575, 581
HpyF3I	CTNAG	2 cut(s)	606, 795
Hsp92II	CATG	4 cut(s)	76, 479, 519, 712
KflI	GGGWCCC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	520
LpnPI	CCDG	6 cut(s)	213, 324, 390, 405, 457, 499
Lsp1109I	GCAGC	2 cut(s)	251, 587
LweI	GCATC	3 cut(s)	52, 230, 365
MaeI	CTAG	2 cut(s)	267, 759
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	1 cut(s)	522
MboI	GATC	1 cut(s)	520
MboII	GAAGA	5 cut(s)	23, 157, 695, 725, 799
MhlI	GDGCHC	2 cut(s)	427, 505
MluCI	AATT	4 cut(s)	116, 364, 376, 809
MlyI	GAGTC	1 cut(s)	806
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	5 cut(s)	174, 249, 594, 627, 671
MspI	CCGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	575, 581
NdeII	GATC	1 cut(s)	520
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	4 cut(s)	76, 479, 519, 712
NlaIV	GGNNCC	3 cut(s)	197, 198, 484
NmuCI	GTSAC	1 cut(s)	588
NsiI	ATGCAT	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	52, 148, 452
PkrI	GCNGC	2 cut(s)	241, 577
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	197, 198, 484
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
RsaI	GTAC	4 cut(s)	442, 490, 676, 699
RsaNI	GTAC	4 cut(s)	441, 489, 675, 698
SaqAI	TTAA	5 cut(s)	174, 249, 594, 627, 671
SatI	GCNGC	2 cut(s)	240, 576
Sau3AI	GATC	1 cut(s)	520
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	699
SchI	GAGTC	1 cut(s)	806
SduI	GDGCHC	2 cut(s)	427, 505
SetI	ASST	9 cut(s)	171, 244, 306, 406, 571, 580, 627, 745, 764
SfaNI	GCATC	3 cut(s)	52, 230, 365
SinI	GGWCC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	4 cut(s)	116, 364, 376, 809
SsiI	CCGC	2 cut(s)	142, 729
SspMI	CTAG	2 cut(s)	267, 759
TaaI	ACNGT	2 cut(s)	155, 214
TaqI	TCGA	2 cut(s)	530, 800
TasI	AATT	4 cut(s)	116, 364, 376, 809
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	3 cut(s)	52, 148, 452
Tru1I	TTAA	5 cut(s)	174, 249, 594, 627, 671
Tru9I	TTAA	5 cut(s)	174, 249, 594, 627, 671
TscAI	CASTG	4 cut(s)	62, 217, 337, 424
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	2 cut(s)	239, 575
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	5 cut(s)	24, 89, 243, 492, 800
TspRI	CASTG	4 cut(s)	62, 217, 337, 424
VneI	GTGCAC	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	2 cut(s)	267, 759
ZrmI	AGTACT	1 cut(s)	699
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.