Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

14427915 .. 14428907

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G117400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCCCCAAGAATGTTGACGGTGAGGAAAAATTATTGCATGATCATGTGAAGAATGGTGACTTGCAAGCATCAACCTTTAAAAAGAAAGTTTGGTCCGAAATAAGCGAGGAGTTATCAGGAAAATGTGGAAAAAAATGCACTATTAAGCAACTTAAGTCTAAGTTTAATAGGTTGCGAACTGCACATGATGAGTTCTCGGATCTAATTGAGCACATTGGATTTGGGTGGGATCTTATTGCTAACACAGTCATTGCTTCAGATAATAGTAACCCAAGAGCGAAGCAATATCGCACTCAAGGTTTAGTGCACTATCAGCTTTTAGGGGAGATATTTAACACCACTACTGCAATCGATCAATTGCGTTATGCCTCTAATCAACATCCTCCTAACTCAAATAAAAACAGTGAGTTAGAGAACTACTTCCTTAACATCAGTGTTAACATTGATGTTGACTTGGATGATGATGGTGTTAACCTGGAAATTGATCATGGTAAAGGAAAAAGAAAGTCTGAAAAGAGTCTTGAAGCATCTAGCACCTCCAATGAGATGTATTATATTGAAGAATGCATCGGACTTGTTGAAGAAATTGGGGACATTGATAATGACACATTTAACAAAATGCTAGAAAAAATTGTGCTTGAAGAATGGAGGAAAATATTTGTTATAATGCCATATGCTAGGAGAAGAGCTTGGTTAGCTAGTCTTCAGGAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

240

Amino Acids

27.44

Weight (kDa)

5.45

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
AclWI	GGATC	2 cut(s)	210, 240
AcuI	CTGAAG	2 cut(s)	243, 692
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	527, 563, 584, 644
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	3 cut(s)	319, 692, 701
AluI	AGCT	3 cut(s)	319, 692, 701
Alw21I	GWGCWC	2 cut(s)	216, 312
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	210, 240
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	4, 96
AsuHPI	GGTGA	2 cut(s)	35, 71
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	2 cut(s)	216, 312
BccI	CCATC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	2 cut(s)	43, 487
BfaI	CTAG	5 cut(s)	534, 626, 681, 702, 718
BfrI	CTTAAG	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	4, 96
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	3 cut(s)	80, 539, 579
BpiI	GAAGAC	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	479
BseCI	ATCGAT	1 cut(s)	354
BseGI	GGATG	2 cut(s)	382, 466
BseMI	GCAATG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	216, 312
BslFI	GGGAC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	216, 312
Bsp143I	GATC	5 cut(s)	43, 202, 232, 355, 487
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	210, 240
BspQI	GCTCTTC	1 cut(s)	682
BspTI	CTTAAG	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	252
BssMI	GATC	5 cut(s)	43, 202, 232, 355, 487
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	23, 250, 407
Bst6I	CTCTTC	1 cut(s)	682
BstAFI	CTTAAG	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	382, 466
BstKTI	GATC	5 cut(s)	46, 205, 235, 358, 490
BstMBI	GATC	5 cut(s)	43, 202, 232, 355, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 698
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	2 cut(s)	202, 232
BstYI	RGATCY	2 cut(s)	202, 232
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	382, 466
BtsIMutI	CAGTG	2 cut(s)	412, 442
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	4, 96
ClaI	ATCGAT	1 cut(s)	354
CviAII	CATG	4 cut(s)	41, 47, 188, 491
CviJI	RGCY	4 cut(s)	5, 319, 692, 701
CviKI_1	RGCY	4 cut(s)	5, 319, 692, 701
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	5 cut(s)	45, 204, 234, 357, 489
DpnII	GATC	5 cut(s)	43, 202, 232, 355, 487
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	243, 692
EcoRII	CCWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	572
FaeI	CATG	4 cut(s)	44, 50, 191, 494
FaiI	YATR	9 cut(s)	42, 48, 189, 369, 492, 558, 668, 676, 678
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	4 cut(s)	40, 46, 187, 490
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	2 cut(s)	43, 487
FokI	GGATG	2 cut(s)	369, 473
FspBI	CTAG	5 cut(s)	534, 626, 681, 702, 718
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	44, 50, 191, 494
HincII	GTYRAC	4 cut(s)	19, 442, 454, 475
HindII	GTYRAC	4 cut(s)	19, 442, 454, 475
HinfI	GANTC	1 cut(s)	520
HpaI	GTTAAC	2 cut(s)	442, 475
HphI	GGTGA	2 cut(s)	35, 71
Hpy166II	GTNNAC	5 cut(s)	19, 310, 442, 454, 475
Hpy188I	TCNGA	5 cut(s)	100, 202, 262, 514, 575
Hpy188III	TCNNGA	3 cut(s)	120, 524, 710
Hpy8I	GTNNAC	5 cut(s)	19, 310, 442, 454, 475
HpyCH4III	ACNGT	3 cut(s)	23, 250, 407
HpyCH4V	TGCA	7 cut(s)	40, 67, 141, 185, 310, 350, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 698
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	44, 50, 191, 494
Ksp22I	TGATCA	2 cut(s)	43, 487
KspAI	GTTAAC	2 cut(s)	442, 475
Kzo9I	GATC	5 cut(s)	43, 202, 232, 355, 487
LguI	GCTCTTC	1 cut(s)	682
LpnPI	CCDG	4 cut(s)	105, 464, 491, 695
LweI	GCATC	3 cut(s)	80, 539, 579
MaeI	CTAG	5 cut(s)	534, 626, 681, 702, 718
MaeIII	GTNAC	2 cut(s)	59, 269
MalI	GATC	5 cut(s)	45, 204, 234, 357, 489
MboI	GATC	5 cut(s)	43, 202, 232, 355, 487
MboII	GAAGA	6 cut(s)	64, 575, 596, 656, 698, 699
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	2 cut(s)	202, 232
MhlI	GDGCHC	2 cut(s)	216, 312
MluCI	AATT	6 cut(s)	32, 207, 359, 483, 588, 633
MlyI	GAGTC	1 cut(s)	529
MnlI	CCTC	6 cut(s)	19, 103, 382, 396, 550, 645
Mph1103I	ATGCAT	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	9 cut(s)	81, 147, 156, 168, 336, 429, 441, 474, 615
MslI	CAYNNNNRTG	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	479
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	316, 698
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	5 cut(s)	43, 202, 232, 355, 487
NlaIII	CATG	4 cut(s)	44, 50, 191, 494
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	572
PciSI	GCTCTTC	1 cut(s)	682
PctI	GAATGC	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
PsiI	TTATAA	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 96
PsuI	RGATCY	2 cut(s)	202, 232
RseI	CAYNNNNRTG	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	682
SaqAI	TTAA	9 cut(s)	81, 147, 156, 168, 336, 429, 441, 474, 615
Sau3AI	GATC	5 cut(s)	43, 202, 232, 355, 487
Sau96I	GGNCC	2 cut(s)	4, 96
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	2 cut(s)	216, 312
SetI	ASST	8 cut(s)	80, 176, 304, 321, 480, 542, 694, 703
SfaNI	GCATC	3 cut(s)	80, 539, 579
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	155, 297
SmoI	CTYRAG	2 cut(s)	155, 297
Sse9I	AATT	6 cut(s)	32, 207, 359, 483, 588, 633
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	5 cut(s)	534, 626, 681, 702, 718
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	23, 250, 407
TaqI	TCGA	1 cut(s)	354
TasI	AATT	6 cut(s)	32, 207, 359, 483, 588, 633
Tru1I	TTAA	9 cut(s)	81, 147, 156, 168, 336, 429, 441, 474, 615
Tru9I	TTAA	9 cut(s)	81, 147, 156, 168, 336, 429, 441, 474, 615
TscAI	CASTG	2 cut(s)	412, 442
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	2 cut(s)	412, 442
Vha464I	CTTAAG	1 cut(s)	155
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	5 cut(s)	534, 626, 681, 702, 718
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.