Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

76053502 .. 76056112

Gene Structure 2611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAACCTGAGCTCCTCCTTCATGAAATCAAAGAAGAGCAGAGCGAGAGTGAGCGGAGGAGAGAGAGATGGCCCCTCAAAAAAAAAAAGGAGATAGCCTCTGCCAAGAATAAGAATGTTGATGATGATAATGAAAAGGAAACAGCTGACTGGTCCAACAAAAGGGAAGAAATATTTATAGACATATTGTATGAACATGTGAAGAAAGGGGAATTGCAGGCATCTACTTTCAAAGCAAAAACTTGGGCAGAGATAGGTGATGAATTATTTGCACAAGTAGGCAAAAGATTTGCTCTTGACCAGCTCACTGGTAAATTTAATAGGCTACGCATTTTACATCGTGAATTCTCAGATTTACTAGAGCATACGGGATTTGGGTGGGATCCTGTATCCAACACGATAACTGCATCTCCAGATGTTTGGGATAATTATCTTCAGAAAAAGCCAAAGATGAAGAAATTTCGGCTTAAAGGCTTGCCCCACTATGAAACTCTAGATGTCATTAATATTGATGGAGAATGTGATGGAGGTAAAGGAAAAAGGAAATCTACAATTGATGCCCCTTTTTCATATGATCGCAAGCCAAAGAAATGGGAAAAAATGGAGAGTTATTTGGATGTTTGTAGTGAAGTCATGGCTGAAAAATTGAAACGCCAAAAGGACAAAAGTACTGAGGCAACTAGCAATTTAAAAGAGATGTATTCAATTGAAGAGTGTATGGAAGTTGTGGAGGAAATGGGAGACATTGAGCATACAGCTTTCATAAAGATGATGGATAAAATTGTAACTCTTGAGTGGAGGAAAATTTTTCTTAAAATGTCGGATGCAAGGAGAAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

280

Amino Acids

32.99

Weight (kDa)

6.64

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	51 - 144	3.3e-19	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	377, 390
AcsI	RAATTY	4 cut(s)	314, 344, 458, 804
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	232, 649, 705, 710
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	4 cut(s)	13, 146, 304, 758
AluI	AGCT	4 cut(s)	13, 146, 304, 758
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	2 cut(s)	377, 390
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	4 cut(s)	314, 344, 458, 804
AseI	ATTAAT	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	72, 153
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	4 cut(s)	63, 506, 518, 766
BciVI	GTATCC	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	735
BfaI	CTAG	3 cut(s)	359, 494, 681
BfuI	GTATCC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	670
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	72, 153
BmiI	GGNNCC	3 cut(s)	6, 74, 384
BmsI	GCATC	4 cut(s)	230, 416, 547, 814
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	812
BsaBI	GATNNNNATC	1 cut(s)	429
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	155, 313
Bse8I	GATNNNNATC	1 cut(s)	429
BseGI	GGATG	2 cut(s)	622, 829
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	363, 663
BseNI	ACTGG	2 cut(s)	155, 313
BseRI	GAGGAG	2 cut(s)	5, 73
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	735
BsnI	GGCC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	382, 574
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	362, 664
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	6, 74, 384
BspPI	GGATC	2 cut(s)	377, 390
BspQI	GCTCTTC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	155, 313
BssMI	GATC	2 cut(s)	382, 574
Bst6I	CTCTTC	2 cut(s)	30, 705
BstC8I	GCNNGC	3 cut(s)	219, 476, 581
BstDEI	CTNAG	4 cut(s)	9, 349, 672, 840
BstF5I	GGATG	2 cut(s)	622, 829
BstKTI	GATC	2 cut(s)	385, 577
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	2 cut(s)	382, 574
BstNSI	RCATGY	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	3 cut(s)	308, 420, 591
BstYI	RGATCY	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	622, 829
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	219, 476, 581
CciI	TCATGA	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	72, 153
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	3 cut(s)	23, 197, 634
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	4 cut(s)	9, 349, 672, 840
DpnI	GATC	2 cut(s)	384, 576
DpnII	GATC	2 cut(s)	382, 574
DraI	TTTAAA	1 cut(s)	690
Eam1104I	CTCTTC	2 cut(s)	30, 705
EarI	CTCTTC	2 cut(s)	30, 705
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	3 cut(s)	26, 200, 637
FatI	CATG	3 cut(s)	22, 196, 633
FauNDI	CATATG	1 cut(s)	571
FokI	GGATG	2 cut(s)	629, 836
FriOI	GRGCYC	1 cut(s)	15
FspBI	CTAG	3 cut(s)	359, 494, 681
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	26, 200, 637
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	352, 438, 823
Hpy188III	TCNNGA	6 cut(s)	23, 296, 341, 413, 494, 791
HpyAV	CCTTC	2 cut(s)	29, 828
HpyCH4V	TGCA	4 cut(s)	217, 272, 407, 827
HpyF3I	CTNAG	4 cut(s)	9, 349, 672, 840
Hsp92II	CATG	3 cut(s)	26, 200, 637
Kzo9I	GATC	2 cut(s)	382, 574
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	7 cut(s)	21, 136, 203, 294, 314, 399, 426
LweI	GCATC	4 cut(s)	230, 416, 547, 814
MaeI	CTAG	3 cut(s)	359, 494, 681
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	2 cut(s)	384, 576
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	382, 574
MboII	GAAGA	6 cut(s)	47, 179, 214, 425, 466, 722
MfeI	CAATTG	2 cut(s)	552, 705
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	15
MmeI	TCCRAC	3 cut(s)	180, 417, 801
MnlI	CCTC	8 cut(s)	26, 51, 86, 109, 521, 667, 724, 792
MseI	TTAA	5 cut(s)	318, 468, 504, 689, 813
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	146
MunI	CAATTG	2 cut(s)	552, 705
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	2 cut(s)	382, 574
NlaIII	CATG	3 cut(s)	26, 200, 637
NlaIV	GGNNCC	3 cut(s)	6, 74, 384
NspI	RCATGY	1 cut(s)	200
PagI	TCATGA	1 cut(s)	22
PciI	ACATGT	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	196
PshBI	ATTAAT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 74, 384
PspPI	GGNCC	2 cut(s)	72, 153
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
RseI	CAYNNNNRTG	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	5 cut(s)	318, 468, 504, 689, 813
Sau3AI	GATC	2 cut(s)	382, 574
Sau96I	GGNCC	2 cut(s)	72, 153
ScaI	AGTACT	1 cut(s)	670
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	7 cut(s)	10, 15, 148, 259, 306, 532, 760
SfaNI	GCATC	4 cut(s)	230, 416, 547, 814
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SsiI	CCGC	1 cut(s)	55
SspI	AATATT	2 cut(s)	174, 508
SspMI	CTAG	3 cut(s)	359, 494, 681
SstI	GAGCTC	1 cut(s)	15
TatI	WGTACW	1 cut(s)	668
Tru1I	TTAA	5 cut(s)	318, 468, 504, 689, 813
Tru9I	TTAA	5 cut(s)	318, 468, 504, 689, 813
TscAI	CASTG	1 cut(s)	313
TspDTI	ATGAA	9 cut(s)	11, 39, 147, 207, 276, 467, 501, 558, 751
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	153
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	4 cut(s)	314, 344, 458, 804
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	3 cut(s)	359, 494, 681
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.