Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

41955337 .. 41956703

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAATCCCGTAGATGGCCCCTCAAAAAAAAAGGAGGAGATAGCCTCTGCCAAGAATAAGAATGTTGATGATGATAATGAAAAGGAAACAGCTGACTGGTCCAACAAAAGGGAAGAAATATTTATAGACATATTGTATGAACATGTGAAGAAAGGGGAATTGCAGGCATCTACTTTCAAAGCAAAAACTTGGGCAGAGATAGGTGATGAATTATTTGCACAAGTAGGCAAAAGATTTGCTCTTGACCAGCTCACTGGTAAATTTAATAGGCTACGCATTTTACATCGTGAATTCTCATATTTACTAGAGCATACGGGATTTGGGTGGGATCCTGTATCCAACACGATAACTGCATCTCCGGATGTTTGGGATAATTATCTTCAGAAAAAGCCAAAGATGAAGAAATTTCGGCTTAAAGGCTTGCCCCACTATGAAACTCTAGGTGAAATATTCAACACCACTACTGCAACAGGTCAAATGCATTATGCATCTGGCCAAATTCATGATAAAGTTGATGATGTAGATGTCATTAATATTGATGGAGAATGTGATGGAGGTAAAGGAAAAAGGAAATCTACAATTGATGCCCCTTTTTCATATGATCGCAAGCCAAAGAAATGGGAAAAAATGGAGAGTTATTTGGATGTTTGTAGTGAAGTCATGGCTGAAAAATTGAAACGCCAAAAGGACAAAAGTACTGAGGCAACTAGCAATTTAAAAGAGATGTATTCAATTGAAGAGTGTATGGAAGTTGTGGAGGAAATGGGAGACATTGAGCATACAGCTTTCATAAAGATGATGGATAAAATTGTAACTCTTGAGTGGAGGAAAATTTTTCTTAAAATGTCGGATGCAAGGAGAAGGGCTTGGTTAGCTAGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

294

Amino Acids

34.02

Weight (kDa)

6.23

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	33 - 126	1.2e-18	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	358
AclWI	GGATC	2 cut(s)	323, 336
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	5 cut(s)	260, 290, 404, 498, 831
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	2 cut(s)	14, 108
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	178, 454, 676, 732, 737
AluBI	AGCT	4 cut(s)	92, 250, 785, 875
AluI	AGCT	4 cut(s)	92, 250, 785, 875
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	2 cut(s)	323, 336
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	2 cut(s)	16, 493
ApoI	RAATTY	5 cut(s)	260, 290, 404, 498, 831
AseI	ATTAAT	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	17, 99
AsuHPI	GGTGA	2 cut(s)	215, 455
AvaII	GGWCC	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	495
BamHI	GGATCC	1 cut(s)	328
BccI	CCATC	4 cut(s)	8, 533, 545, 793
BciVI	GTATCC	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	4 cut(s)	305, 440, 708, 876
BfuI	GTATCC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	697
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	17, 99
BmiI	GGNNCC	2 cut(s)	19, 330
BmsI	GCATC	5 cut(s)	176, 362, 497, 574, 841
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpuEI	CTTGAG	1 cut(s)	839
BsaBI	GATNNNNATC	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 108
Bse1I	ACTGG	2 cut(s)	101, 259
Bse8I	GATNNNNATC	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	358
BseGI	GGATG	3 cut(s)	367, 649, 856
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	14, 108
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	2 cut(s)	101, 259
BseRI	GAGGAG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	18, 495
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	14, 108
BsmAI	GTCTC	1 cut(s)	762
BsnI	GGCC	2 cut(s)	18, 495
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	328, 601
BspANI	GGCC	2 cut(s)	18, 495
BspCNI	CTCAG	1 cut(s)	691
BspEI	TCCGGA	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	19, 330
BspPI	GGATC	2 cut(s)	323, 336
BsrI	ACTGG	2 cut(s)	101, 259
BssMI	GATC	2 cut(s)	328, 601
Bst6I	CTCTTC	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	165, 422, 608
BstDEI	CTNAG	1 cut(s)	699
BstF5I	GGATG	3 cut(s)	367, 649, 856
BstKTI	GATC	2 cut(s)	331, 604
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	2 cut(s)	328, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	872
BstNSI	RCATGY	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	2 cut(s)	254, 618
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	18, 495
BtsCI	GGATG	3 cut(s)	367, 649, 856
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	165, 422, 608
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	17, 99
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	3 cut(s)	143, 503, 661
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	2 cut(s)	330, 603
DpnII	GATC	2 cut(s)	328, 601
DraI	TTTAAA	1 cut(s)	717
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	290
EcoT22I	ATGCAT	2 cut(s)	483, 490
FaeI	CATG	3 cut(s)	146, 506, 664
FatI	CATG	3 cut(s)	142, 502, 660
FauNDI	CATATG	1 cut(s)	598
FokI	GGATG	3 cut(s)	374, 656, 863
FspBI	CTAG	4 cut(s)	305, 440, 708, 876
HaeIII	GGCC	2 cut(s)	18, 495
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	3 cut(s)	146, 506, 664
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	215, 455
Hpy188I	TCNGA	2 cut(s)	384, 850
Hpy188III	TCNNGA	5 cut(s)	242, 287, 359, 503, 818
HpyAV	CCTTC	1 cut(s)	855
HpyCH4V	TGCA	7 cut(s)	163, 218, 353, 467, 481, 488, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	872
HpyF3I	CTNAG	1 cut(s)	699
Hsp92II	CATG	3 cut(s)	146, 506, 664
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	328, 601
LpnPI	CCDG	8 cut(s)	82, 149, 240, 260, 345, 372, 456, 477
LweI	GCATC	5 cut(s)	176, 362, 497, 574, 841
MaeI	CTAG	4 cut(s)	305, 440, 708, 876
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	2 cut(s)	330, 603
MboI	GATC	2 cut(s)	328, 601
MboII	GAAGA	5 cut(s)	125, 160, 371, 412, 749
MfeI	CAATTG	2 cut(s)	579, 732
MflI	RGATCY	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	495
MluNI	TGGCCA	1 cut(s)	495
MmeI	TCCRAC	3 cut(s)	126, 363, 828
MnlI	CCTC	7 cut(s)	28, 31, 55, 548, 694, 751, 819
Mox20I	TGGCCA	1 cut(s)	495
Mph1103I	ATGCAT	2 cut(s)	483, 490
MroI	TCCGGA	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	5 cut(s)	264, 414, 531, 716, 840
MslI	CAYNNNNRTG	1 cut(s)	794
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	359
MunI	CAATTG	2 cut(s)	579, 732
MwoI	GCNNNNNNNGC	1 cut(s)	872
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	2 cut(s)	328, 601
NlaIII	CATG	3 cut(s)	146, 506, 664
NlaIV	GGNNCC	2 cut(s)	19, 330
NsiI	ATGCAT	2 cut(s)	483, 490
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	502
PciI	ACATGT	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	4
PscI	ACATGT	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	19, 330
PspPI	GGNCC	2 cut(s)	17, 99
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	1 cut(s)	794
SaqAI	TTAA	5 cut(s)	264, 414, 531, 716, 840
Sau3AI	GATC	2 cut(s)	328, 601
Sau96I	GGNCC	2 cut(s)	17, 99
ScaI	AGTACT	1 cut(s)	697
SetI	ASST	8 cut(s)	94, 205, 252, 445, 475, 559, 787, 877
SfaNI	GCATC	5 cut(s)	176, 362, 497, 574, 841
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SspI	AATATT	3 cut(s)	120, 450, 535
SspMI	CTAG	4 cut(s)	305, 440, 708, 876
TatI	WGTACW	1 cut(s)	695
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	5 cut(s)	264, 414, 531, 716, 840
Tru9I	TTAA	5 cut(s)	264, 414, 531, 716, 840
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	9 cut(s)	17, 93, 153, 222, 413, 447, 491, 585, 778
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	99
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	5 cut(s)	260, 290, 404, 498, 831
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	4 cut(s)	305, 440, 708, 876
ZrmI	AGTACT	1 cut(s)	697
Zsp2I	ATGCAT	2 cut(s)	483, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.