Rh4DG015000
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
2351661 .. 2351957
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG015000.1

Sequence Viewer

Length: 297 bp
ATGACAGAGGCTCCAGCTTCAGAGCGTCGTACAAAGAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTGAGGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGCTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGAGACATTGACCATGCCACATTTATCAAAATGATGGATAAGCTTATAATTGTTGAATGGAGGAGGCTCTTTCTTTCCATGTCAGATGAAAGAAGGAGAGCTTGGCTAGCTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.78

Weight (kDa)

5.93

Isoelectric Point (pI)

70.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 2 cut(s) 31, 140
AgsI TTSAA 2 cut(s) 149, 233
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AluBI AGCT 5 cut(s) 17, 94, 220, 278, 287
AluI AGCT 5 cut(s) 17, 94, 220, 278, 287
Alw26I GTCTC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 86, 91
AsuNHI GCTAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 284, 295
BmcAI AGTACT 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 12
BmtI GCTAGC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BsaXI ACNNNNNCTCC 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 12
BspOI GCTAGC 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 117, 144
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 285
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 30, 139
CviAII CATG 2 cut(s) 191, 256
CviJI RGCY 9 cut(s) 11, 17, 56, 94, 220, 244, 278, 283, 287
CviKI_1 RGCY 9 cut(s) 11, 17, 56, 94, 220, 244, 278, 283, 287
CviQI GTAC 2 cut(s) 30, 139
DdeI CTNAG 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 117, 144
EarI CTCTTC 2 cut(s) 117, 144
Eco57I CTGAAG 1 cut(s) 141
FaeI CATG 2 cut(s) 194, 259
FaiI YATR 3 cut(s) 192, 224, 257
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 190, 255
FspBI CTAG 2 cut(s) 284, 295
HgaI GACGC 1 cut(s) 14
Hin1II CATG 2 cut(s) 194, 259
HindIII AAGCTT 1 cut(s) 218
HphI GGTGA 2 cut(s) 86, 91
Hpy188I TCNGA 2 cut(s) 22, 262
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 2 cut(s) 194, 259
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 1 cut(s) 27
MaeI CTAG 2 cut(s) 284, 295
MboII GAAGA 2 cut(s) 134, 161
MluCI AATT 3 cut(s) 66, 162, 225
MnlI CCTC 3 cut(s) 70, 231, 234
MwoI GCNNNNNNNGC 1 cut(s) 284
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 2 cut(s) 194, 259
NlaIV GGNNCC 1 cut(s) 12
PsiI TTATAA 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 31, 140
RsaNI GTAC 2 cut(s) 30, 139
ScaI AGTACT 1 cut(s) 140
SetI ASST 6 cut(s) 19, 81, 96, 222, 280, 289
SgeI CNNG 4 cut(s) 26, 203, 268, 291
Sse9I AATT 3 cut(s) 66, 162, 225
SspMI CTAG 2 cut(s) 284, 295
TasI AATT 3 cut(s) 66, 162, 225
TatI WGTACW 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 98, 279
XapI RAATTY 1 cut(s) 66
XspI CTAG 2 cut(s) 284, 295
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.