Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

33021560 .. 33023097

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGCAGACTTTCATCATGATCAAGCCTGATGGTGTTCAGAGGGGCCTGATTGGTGAGATTATCAGCAGGTTTGAGAAGAAGGGTTTCTCTTTGAAAGGCTTGAAGTTCATCACTGTGGATCGTCCTTTTGCTGAGAAGCACTATGCAGACTTGTCTGCAAAGCCCTTTTTCAGTGGATTGGTTGATTATATTGTTTCTGGTCCTGTTGTTGCTATGATCTGGGAGGGTAAGAATGTTGTGTCAACTGGCCGAAAGATTATTGGAGCCACAAACCCTGCAGAGTCTGCCCCTGGAACCATCCGTGGTGATTTTGCTGTTGAGATTGGCAGGAATATCATTCATGGAAGTGACGCAGTTGAGAGTGCAAGGAAAGAGATTGCACTGTGGTTCCCTGAAGGCCCTGTTCACTGGCAGAGCAGTGTTAGCCACTGGATCTATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

148

Amino Acids

16.38

Weight (kDa)

6.92

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	2 - 133	1.3e-57	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AclWI	GGATC	2 cut(s)	129, 443
AcoI	YGGCCR	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	97, 106
AjnI	CCWGG	1 cut(s)	292
AlwI	GGATC	2 cut(s)	129, 443
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	46, 250, 400
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	46, 203, 401
AsuHPI	GGTGA	2 cut(s)	68, 320
AvaII	GGWCC	1 cut(s)	203
BccI	CCATC	2 cut(s)	26, 308
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	46, 203, 401
BmiI	GGNNCC	4 cut(s)	47, 268, 298, 392
BmrFI	CCNGG	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	292, 304
Bse1I	ACTGG	3 cut(s)	253, 416, 437
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	292, 304
BseGI	GGATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	3 cut(s)	253, 416, 437
BshFI	GGCC	3 cut(s)	48, 252, 402
BsnI	GGCC	3 cut(s)	48, 252, 402
Bsp143I	GATC	4 cut(s)	21, 121, 219, 435
BspANI	GGCC	3 cut(s)	48, 252, 402
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	4 cut(s)	47, 268, 298, 392
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	129, 443
BsrI	ACTGG	3 cut(s)	253, 416, 437
BssECI	CCNNGG	2 cut(s)	292, 304
BssMI	GATC	4 cut(s)	21, 121, 219, 435
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	118, 387
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	4 cut(s)	24, 124, 222, 438
BstMBI	GATC	4 cut(s)	21, 121, 219, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 426
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	48, 252, 402
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	6 cut(s)	114, 181, 383, 409, 427, 430
BveI	ACCTGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	46, 203, 401
CseI	GACGC	1 cut(s)	362
CviAII	CATG	2 cut(s)	19, 344
CviJI	RGCY	8 cut(s)	28, 48, 102, 166, 252, 269, 402, 429
CviKI_1	RGCY	8 cut(s)	28, 48, 102, 166, 252, 269, 402, 429
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	4 cut(s)	23, 123, 221, 437
DpnII	GATC	4 cut(s)	21, 121, 219, 435
EaeI	YGGCCR	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	417
EcoO109I	RGGNCCY	2 cut(s)	46, 401
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	2 cut(s)	22, 347
FaiI	YATR	6 cut(s)	20, 147, 192, 218, 345, 441
FatI	CATG	2 cut(s)	18, 343
FbaI	TGATCA	1 cut(s)	21
FokI	GGATG	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	48, 252, 402
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	22, 347
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	1 cut(s)	284
HphI	GGTGA	2 cut(s)	68, 320
Hpy166II	GTNNAC	2 cut(s)	246, 409
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	246, 409
HpyAV	CCTTC	2 cut(s)	76, 392
HpyCH4III	ACNGT	2 cut(s)	118, 387
HpyCH4V	TGCA	5 cut(s)	149, 161, 281, 368, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 426
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	22, 347
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	21, 121, 219, 435
LmnI	GCTCC	2 cut(s)	4, 266
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	4 cut(s)	23, 123, 221, 437
MboI	GATC	4 cut(s)	21, 121, 219, 435
MboII	GAAGA	1 cut(s)	91
MflI	RGATCY	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	2 cut(s)	36, 220
MroXI	GAANNNNTTC	1 cut(s)	86
MslI	CAYNNNNRTG	2 cut(s)	116, 348
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	287, 426
NdeII	GATC	4 cut(s)	21, 121, 219, 435
NlaIII	CATG	2 cut(s)	22, 347
NlaIV	GGNNCC	4 cut(s)	47, 268, 298, 392
NmuCI	GTSAC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	47, 268, 298, 392
PspPI	GGNCC	3 cut(s)	46, 203, 401
PstI	CTGCAG	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	435
RseI	CAYNNNNRTG	2 cut(s)	116, 348
Sau3AI	GATC	4 cut(s)	21, 121, 219, 435
Sau96I	GGNCC	3 cut(s)	46, 203, 401
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	1 cut(s)	74
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	116, 348
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	118, 387
TscAI	CASTG	6 cut(s)	121, 181, 390, 416, 427, 437
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	4, 100, 332
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	6 cut(s)	121, 181, 390, 416, 427, 437
VpaK11BI	GGWCC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.